RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Gtf3c3Q3TMP1 882 aa29.2■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 RdxP26043 583 aaKnown RBP29.19■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Speer4f1Q9D5Q6 258 aa29.19■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Rrp7aQ9D1C9 280 aaKnown RBP29.18■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Rundc1Q0VDN7 615 aa29.17■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Tmf1B9EKI3 1091 aa29.17■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Sart3Q9JLI8 962 aaKnown RBP29.14■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Pkd2O35245 966 aa29.12■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Pcmtd1P59913 357 aa29.11■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Cald1E9QA15 768 aaKnown RBP29.11■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Arhgap35Q91YM2 1499 aa29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Cep162Q6ZQ06 1403 aa29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Smarce1O54941 411 aaKnown RBP29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Becn1O88597 448 aa29.09■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Fyco1Q8VDC1 1437 aa29.09■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Arhgap27A2AB59 869 aa29.08■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Ercc6F8VPZ5 1481 aa29.08■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 CntlnA2AM05 1397 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 VgfQ0VGU4 617 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Baz1bQ9Z277 1479 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Map7d2A2AG50 781 aa29.05■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Sh3bp5Q9Z131 463 aa29.05■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 R3hcc1Q8BSI6 488 aa29.03■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Plppr3Q7TPB0 716 aa29.02■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 SetQ9EQU5 289 aaKnown RBP29.02■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Stk24Q99KH8 431 aa29.01■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Kiaa0754Q69ZZ9 979 aa29.01■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Cspp1B2RX88 1205 aa29■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mfap1aC0HKD8 439 aaKnown RBP28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mfap1bC0HKD9 439 aaKnown RBP28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Atp6v1dP57746 247 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 1700019A02RikA0A087WPV9 146 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mre11Q61216 706 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Golga2Q921M4 999 aa28.98■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Rock2P70336 1388 aa28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Map4P27546 1125 aaKnown RBP28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Nolc1E9Q5C9 702 aaKnown RBP28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Fmn1Q05860 1466 aa28.96■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Ush1cQ9ES64 910 aa28.94■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Gtf2e1Q9D0D5 440 aa28.93■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Kif27Q7M6Z4 1394 aa28.93■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Trim30aP15533 496 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Mphosph9A6H5Y1 991 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Sin3aQ60520 1274 aaKnown RBP28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Rsph3aQ3UFY4 516 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Rtf1A2AQ19 715 aaKnown RBP28.91■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Cnga1P29974 684 aa28.89■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 AampJ3QN89 436 aa28.89■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Tpm3-rs7D3Z2H9 248 aa28.88■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Glipr1l2Q9CQ35 332 aa28.88■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 SlkO54988 1233 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Anapc15P60007 132 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Iffo2Q8R2V2 512 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Smg6P61406 1418 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Ylpm1Q9R0I7 1386 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Cgnl1Q6AW69 1298 aa28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Ccar1Q8CH18 1146 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Rassf8Q8CJ96 419 aa28.85■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 CgnP59242 1191 aa28.83■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 U2af1Q9D883 239 aaKnown RBP28.82■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Eif4g2Q62448 906 aaKnown RBP28.82■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Ccdc88bQ4QRL3 1481 aa28.81■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 ChgaP26339 463 aaKnown RBP28.81■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Cluap1Q8R3P7 413 aa28.8■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Ifit1bl1D3Z6F0 470 aa28.8■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Taok2Q6ZQ29 1240 aa28.78■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 U2surpQ6NV83 1029 aaKnown RBP28.77■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Tmco5bQ80X59 307 aa28.76■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Rtn4Q99P72 1162 aaKnown RBP28.74■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Aebp1Q640N1 1128 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 MecomP14404 1042 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Stard8Q8K031 1019 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Pknox2Q8BG99 474 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Dcaf11Q91VU6 549 aa28.71■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 NgefQ8CHT1 710 aa28.7■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Clstn1Q9EPL2 979 aa28.7■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 CrbnQ8C7D2 445 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Trak1Q6PD31 939 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 GorabQ8BRM2 368 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Dnai2A2AC93 623 aa28.67■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Spag9Q58A65 1321 aaKnown RBP28.66■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Ksr2Q3UVC0 959 aa28.65■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 St18Q80TY4 1045 aa28.64■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Tpm3P21107 285 aaKnown RBP28.64■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Q3TQI7 289 aaKnown RBP28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Sf3a1Q8K4Z5 791 aaKnown RBP28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Gpatch11Q3UFS4 262 aa28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Fbxo2Q80UW2 297 aa28.62■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Casq1O09165 405 aa28.61■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Dhx57Q6P5D3 1388 aaKnown RBP28.61■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Pdcl3Q8BVF2 240 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Cabp1Q9JLK7 227 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Srcin1Q9QWI6 1250 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 UacaQ8CGB3 1411 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Kdm5dQ62240 1548 aa28.58■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Znf330Q922H9 316 aa28.58■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Plekhh2Q8C115 1491 aa28.57■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Nup155Q99P88 1391 aaKnown RBP28.57■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Kif16bB1AVY7 1312 aa28.55■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Nol10Q5RJG1 687 aaKnown RBP28.54■■■□□ 2.16
Retrieved 100 of 22,080 RNA–protein pairs in 22 ms