RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Gtf3c3Q3TMP1 882 aa29.2■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 RdxP26043 583 aaKnown RBP29.19■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Speer4f1Q9D5Q6 258 aa29.19■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Rrp7aQ9D1C9 280 aaKnown RBP29.18■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Rundc1Q0VDN7 615 aa29.17■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Tmf1B9EKI3 1091 aa29.17■■■□□ 2.26
Sh3rf1-201ENSMUST00000034060 Sart3Q9JLI8 962 aaKnown RBP29.14■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Pkd2O35245 966 aa29.12■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Pcmtd1P59913 357 aa29.11■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Cald1E9QA15 768 aaKnown RBP29.11■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Arhgap35Q91YM2 1499 aa29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Cep162Q6ZQ06 1403 aa29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Smarce1O54941 411 aaKnown RBP29.1■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Becn1O88597 448 aa29.09■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Fyco1Q8VDC1 1437 aa29.09■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Arhgap27A2AB59 869 aa29.08■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 Ercc6F8VPZ5 1481 aa29.08■■■□□ 2.25
Sh3rf1-201ENSMUST00000034060 CntlnA2AM05 1397 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 VgfQ0VGU4 617 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Baz1bQ9Z277 1479 aa29.07■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Map7d2A2AG50 781 aa29.05■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Sh3bp5Q9Z131 463 aa29.05■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 R3hcc1Q8BSI6 488 aa29.03■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Plppr3Q7TPB0 716 aa29.02■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 SetQ9EQU5 289 aaKnown RBP29.02■■■□□ 2.24
Sh3rf1-201ENSMUST00000034060 Stk24Q99KH8 431 aa29.01■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Kiaa0754Q69ZZ9 979 aa29.01■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Cspp1B2RX88 1205 aa29■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mfap1aC0HKD8 439 aaKnown RBP28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mfap1bC0HKD9 439 aaKnown RBP28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Atp6v1dP57746 247 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 1700019A02RikA0A087WPV9 146 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Mre11Q61216 706 aa28.99■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Golga2Q921M4 999 aa28.98■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Rock2P70336 1388 aa28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Map4P27546 1125 aaKnown RBP28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Nolc1E9Q5C9 702 aaKnown RBP28.97■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Fmn1Q05860 1466 aa28.96■■■□□ 2.23
Sh3rf1-201ENSMUST00000034060 Ush1cQ9ES64 910 aa28.94■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Gtf2e1Q9D0D5 440 aa28.93■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Kif27Q7M6Z4 1394 aa28.93■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Trim30aP15533 496 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Mphosph9A6H5Y1 991 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Sin3aQ60520 1274 aaKnown RBP28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Rsph3aQ3UFY4 516 aa28.92■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Rtf1A2AQ19 715 aaKnown RBP28.91■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 Cnga1P29974 684 aa28.89■■■□□ 2.22
Sh3rf1-201ENSMUST00000034060 AampJ3QN89 436 aa28.89■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Tpm3-rs7D3Z2H9 248 aa28.88■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Glipr1l2Q9CQ35 332 aa28.88■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 SlkO54988 1233 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Anapc15P60007 132 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Iffo2Q8R2V2 512 aa28.87■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Smg6P61406 1418 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Ylpm1Q9R0I7 1386 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Cgnl1Q6AW69 1298 aa28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Ccar1Q8CH18 1146 aaKnown RBP28.86■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 Rassf8Q8CJ96 419 aa28.85■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 CgnP59242 1191 aa28.83■■■□□ 2.21
Sh3rf1-201ENSMUST00000034060 U2af1Q9D883 239 aaKnown RBP28.82■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Eif4g2Q62448 906 aaKnown RBP28.82■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Ccdc88bQ4QRL3 1481 aa28.81■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 ChgaP26339 463 aaKnown RBP28.81■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Cluap1Q8R3P7 413 aa28.8■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Ifit1bl1D3Z6F0 470 aa28.8■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Taok2Q6ZQ29 1240 aa28.78■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 U2surpQ6NV83 1029 aaKnown RBP28.77■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Tmco5bQ80X59 307 aa28.76■■■□□ 2.2
Sh3rf1-201ENSMUST00000034060 Rtn4Q99P72 1162 aaKnown RBP28.74■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Aebp1Q640N1 1128 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 MecomP14404 1042 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Stard8Q8K031 1019 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Pknox2Q8BG99 474 aa28.73■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Dcaf11Q91VU6 549 aa28.71■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 NgefQ8CHT1 710 aa28.7■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 Clstn1Q9EPL2 979 aa28.7■■■□□ 2.19
Sh3rf1-201ENSMUST00000034060 CrbnQ8C7D2 445 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Trak1Q6PD31 939 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 GorabQ8BRM2 368 aa28.69■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Dnai2A2AC93 623 aa28.67■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Spag9Q58A65 1321 aaKnown RBP28.66■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Ksr2Q3UVC0 959 aa28.65■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 St18Q80TY4 1045 aa28.64■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Tpm3P21107 285 aaKnown RBP28.64■■■□□ 2.18
Sh3rf1-201ENSMUST00000034060 Q3TQI7 289 aaKnown RBP28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Sf3a1Q8K4Z5 791 aaKnown RBP28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Gpatch11Q3UFS4 262 aa28.63■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Fbxo2Q80UW2 297 aa28.62■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Casq1O09165 405 aa28.61■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Dhx57Q6P5D3 1388 aaKnown RBP28.61■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Pdcl3Q8BVF2 240 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Cabp1Q9JLK7 227 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Srcin1Q9QWI6 1250 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 UacaQ8CGB3 1411 aa28.6■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Kdm5dQ62240 1548 aa28.58■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Znf330Q922H9 316 aa28.58■■■□□ 2.17
Sh3rf1-201ENSMUST00000034060 Plekhh2Q8C115 1491 aa28.57■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Nup155Q99P88 1391 aaKnown RBP28.57■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Kif16bB1AVY7 1312 aa28.55■■■□□ 2.16
Sh3rf1-201ENSMUST00000034060 Nol10Q5RJG1 687 aaKnown RBP28.54■■■□□ 2.16
Retrieved 100 of 22,080 RNA–protein pairs in 10.7 ms