RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Plb1Q3TTY0 1478 aa14.51□□□□□ -0.09
Msh3-201ENSMUST00000022220 Ecm2Q5FW85 670 aa14.51□□□□□ -0.09
Msh3-201ENSMUST00000022220 Ccdc9Q8VC31 543 aaKnown RBP14.5□□□□□ -0.09
Msh3-201ENSMUST00000022220 Mrc2Q64449 1479 aa14.5□□□□□ -0.09
Msh3-201ENSMUST00000022220 Camsap1A2AHC3 1581 aa14.5□□□□□ -0.09
Msh3-201ENSMUST00000022220 Irx3P81067 507 aa14.5□□□□□ -0.09
Msh3-201ENSMUST00000022220 Kif3bQ61771 747 aa14.5□□□□□ -0.09
Msh3-201ENSMUST00000022220 Srpk2O54781 681 aaKnown RBP14.49□□□□□ -0.09
Msh3-201ENSMUST00000022220 Lemd3Q9WU40 921 aa14.48□□□□□ -0.09
Msh3-201ENSMUST00000022220 Gtf3c3Q3TMP1 882 aa14.47□□□□□ -0.09
Msh3-201ENSMUST00000022220 Plekhh2Q8C115 1491 aa14.46□□□□□ -0.1
Msh3-201ENSMUST00000022220 Nup155Q99P88 1391 aaKnown RBP14.45□□□□□ -0.1
Msh3-201ENSMUST00000022220 Pak3Q61036 559 aa14.44□□□□□ -0.1
Msh3-201ENSMUST00000022220 Trim26Q99PN3 545 aa14.44□□□□□ -0.1
Msh3-201ENSMUST00000022220 Cc2d2bA0A286YDU8 1405 aa14.43□□□□□ -0.1
Msh3-201ENSMUST00000022220 Ofd1Q80Z25 1017 aa14.43□□□□□ -0.1
Msh3-201ENSMUST00000022220 AqrQ8CFQ3 1481 aaKnown RBP14.43□□□□□ -0.1
Msh3-201ENSMUST00000022220 Soga1E1U8D0 1418 aa14.42□□□□□ -0.1
Msh3-201ENSMUST00000022220 CadpsQ80TJ1 1355 aa14.42□□□□□ -0.1
Msh3-201ENSMUST00000022220 Gm7298A0A0N4SVU1 1476 aa14.42□□□□□ -0.1
Msh3-201ENSMUST00000022220 Lamc3Q9R0B6 1581 aa14.42□□□□□ -0.1
Msh3-201ENSMUST00000022220 Cwc22Q8C5N3 908 aaKnown RBP14.41□□□□□ -0.1
Msh3-201ENSMUST00000022220 Exoc6Q8R313 802 aa14.41□□□□□ -0.1
Msh3-201ENSMUST00000022220 Stk26Q99JT2 416 aa14.41□□□□□ -0.1
Msh3-201ENSMUST00000022220 Usp47Q8BY87 1376 aa14.4□□□□□ -0.1
Msh3-201ENSMUST00000022220 Arhgef5E9Q7D5 1581 aa14.39□□□□□ -0.11
Msh3-201ENSMUST00000022220 EprsQ8CGC7 1512 aaKnown RBP14.39□□□□□ -0.11
Msh3-201ENSMUST00000022220 Apbb1Q9QXJ1 710 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 Arhgap31A6X8Z5 1425 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 ArxO35085 564 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 Stag3O70576 1240 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 Neurod2Q62414 383 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 Plcd4Q8K3R3 807 aa14.38□□□□□ -0.11
Msh3-201ENSMUST00000022220 Map3k1P53349 1493 aa14.37□□□□□ -0.11
Msh3-201ENSMUST00000022220 Ncapd3Q6ZQK0 1506 aa14.37□□□□□ -0.11
Msh3-201ENSMUST00000022220 Dhx57Q6P5D3 1388 aaKnown RBP14.37□□□□□ -0.11
Msh3-201ENSMUST00000022220 MyclP10166 368 aa14.37□□□□□ -0.11
Msh3-201ENSMUST00000022220 Exosc9Q9JHI7 438 aaKnown RBP14.36□□□□□ -0.11
Msh3-201ENSMUST00000022220 NgefQ8CHT1 710 aa14.35□□□□□ -0.11
Msh3-201ENSMUST00000022220 Pabpn1Q8CCS6 302 aaKnown RBP14.35□□□□□ -0.11
Msh3-201ENSMUST00000022220 Cux1P53564 1515 aa14.35□□□□□ -0.11
Msh3-201ENSMUST00000022220 IqubQ8CDK3 788 aa14.35□□□□□ -0.11
Msh3-201ENSMUST00000022220 UacaQ8CGB3 1411 aa14.34□□□□□ -0.11
Msh3-201ENSMUST00000022220 Ipo9Q91YE6 1041 aa14.34□□□□□ -0.11
Msh3-201ENSMUST00000022220 Fan1Q69ZT1 1020 aa14.31□□□□□ -0.12
Msh3-201ENSMUST00000022220 Spag9Q58A65 1321 aaKnown RBP14.3□□□□□ -0.12
Msh3-201ENSMUST00000022220 Smg6P61406 1418 aaKnown RBP14.3□□□□□ -0.12
Msh3-201ENSMUST00000022220 Map3k5O35099 1380 aa14.29□□□□□ -0.12
Msh3-201ENSMUST00000022220 Washc2Q6PGL7 1334 aa14.29□□□□□ -0.12
Msh3-201ENSMUST00000022220 Tiam1Q60610 1591 aa14.28□□□□□ -0.12
Msh3-201ENSMUST00000022220 Fhad1A6PWD2 1420 aa14.28□□□□□ -0.12
Msh3-201ENSMUST00000022220 Pknox2Q8BG99 474 aa14.28□□□□□ -0.12
Msh3-201ENSMUST00000022220 Tcerg1Q8CGF7 1100 aaKnown RBP14.28□□□□□ -0.12
Msh3-201ENSMUST00000022220 Crocc2F6XLV1 1638 aa14.27□□□□□ -0.13
Msh3-201ENSMUST00000022220 CanxP35564 591 aaKnown RBP14.26□□□□□ -0.13
Msh3-201ENSMUST00000022220 Gtf2e1Q9D0D5 440 aa14.26□□□□□ -0.13
Msh3-201ENSMUST00000022220 Srcin1Q9QWI6 1250 aa14.26□□□□□ -0.13
Msh3-201ENSMUST00000022220 Znf316Q6PGE4 1016 aa14.25□□□□□ -0.13
Msh3-201ENSMUST00000022220 Irx6Q9ER75 438 aa14.25□□□□□ -0.13
Msh3-201ENSMUST00000022220 Polr1aO35134 1717 aaKnown RBP14.25□□□□□ -0.13
Msh3-201ENSMUST00000022220 Slc4a1apE9PX68 744 aa14.25□□□□□ -0.13
Msh3-201ENSMUST00000022220 Pcf11G3X9Z4 1553 aa14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 Grin2aP35436 1464 aa14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 Fgd6Q69ZL1 1399 aa14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 ChgaP26339 463 aaKnown RBP14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 SynmQ70IV5 1561 aa14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 Ttll5Q8CHB8 1328 aa14.24□□□□□ -0.13
Msh3-201ENSMUST00000022220 Dhx9O70133 1380 aaKnown RBP14.23□□□□□ -0.13
Msh3-201ENSMUST00000022220 Plin1Q8CGN5 517 aa14.22□□□□□ -0.13
Msh3-201ENSMUST00000022220 Dcaf11Q91VU6 549 aa14.22□□□□□ -0.13
Msh3-201ENSMUST00000022220 Pde4cQ3UEI1 686 aa14.21□□□□□ -0.13
Msh3-201ENSMUST00000022220 Senp3Q9EP97 568 aaKnown RBP14.21□□□□□ -0.14
Msh3-201ENSMUST00000022220 Ift140E9PY46 1464 aa14.2□□□□□ -0.14
Msh3-201ENSMUST00000022220 Vps8Q0P5W1 1427 aa14.2□□□□□ -0.14
Msh3-201ENSMUST00000022220 Neo1P97798 1493 aa14.2□□□□□ -0.14
Msh3-201ENSMUST00000022220 Pank3Q8R2W9 370 aa14.19□□□□□ -0.14
Msh3-201ENSMUST00000022220 Inpp5dQ9ES52 1191 aa14.19□□□□□ -0.14
Msh3-201ENSMUST00000022220 Ncoa2Q61026 1462 aa14.19□□□□□ -0.14
Msh3-201ENSMUST00000022220 Rock2P70336 1388 aa14.18□□□□□ -0.14
Msh3-201ENSMUST00000022220 Dapk1Q80YE7 1442 aa14.17□□□□□ -0.14
Msh3-201ENSMUST00000022220 Txndc2Q6P902 515 aa14.17□□□□□ -0.14
Msh3-201ENSMUST00000022220 Liat1Q810M6 228 aa14.17□□□□□ -0.14
Msh3-201ENSMUST00000022220 Arid4bA2CG63 1314 aaKnown RBP14.16□□□□□ -0.14
Msh3-201ENSMUST00000022220 Fam163aQ8CAA5 168 aa14.16□□□□□ -0.14
Msh3-201ENSMUST00000022220 Ankrd26Q811D2 1581 aa14.16□□□□□ -0.14
Msh3-201ENSMUST00000022220 Mug1P28665 1476 aa14.15□□□□□ -0.14
Msh3-201ENSMUST00000022220 Tmf1B9EKI3 1091 aa14.15□□□□□ -0.14
Msh3-201ENSMUST00000022220 Fgd1P52734 960 aa14.15□□□□□ -0.14
Msh3-201ENSMUST00000022220 Gm14025A2AP89 1413 aa14.15□□□□□ -0.14
Msh3-201ENSMUST00000022220 A2mQ6GQT1 1474 aa14.15□□□□□ -0.14
Msh3-201ENSMUST00000022220 Zscan21Q07231 555 aa14.14□□□□□ -0.15
Msh3-201ENSMUST00000022220 3425401B19RikD3Z1D3 1412 aa14.14□□□□□ -0.15
Msh3-201ENSMUST00000022220 Slx4Q6P1D7 1565 aa14.14□□□□□ -0.15
Msh3-201ENSMUST00000022220 NexmifQ5DTT1 1515 aa14.14□□□□□ -0.15
Msh3-201ENSMUST00000022220 Dbr1Q923B1 550 aa14.13□□□□□ -0.15
Msh3-201ENSMUST00000022220 1700019A02RikA0A087WPV9 146 aa14.13□□□□□ -0.15
Msh3-201ENSMUST00000022220 Sox12Q04890 314 aa14.12□□□□□ -0.15
Msh3-201ENSMUST00000022220 Usp40Q8BWR4 1235 aa14.12□□□□□ -0.15
Msh3-201ENSMUST00000022220 Gpatch8A2A6A1 1505 aa14.12□□□□□ -0.15
Msh3-201ENSMUST00000022220 CrbnQ8C7D2 445 aa14.12□□□□□ -0.15
Retrieved 100 of 22,080 RNA–protein pairs in 17.8 ms