RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEF1	YKL054C	ARG81	P05085	880 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	GAL3	P13045	520 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	RPL5	P26321	297 aa	Known RBP	5.87	□□□□□ -1.47
DEF1	YKL054C	CDC15	P27636	974 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	DIA4	P38705	446 aa	Predicted RBP	5.87	□□□□□ -1.47
DEF1	YKL054C	RPP1	P38786	293 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	BUR6	P40096	142 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	RIB4	P50861	169 aa	Predicted RBP	5.87	□□□□□ -1.47
DEF1	YKL054C	MND1	P53102	219 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	MRPS17	Q03246	237 aa	Predicted RBP	5.87	□□□□□ -1.47
DEF1	YKL054C	YMR130W	Q04223	302 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	BCP1	Q06338	283 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	TPO1	Q07824	586 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	GEP3	Q08622	556 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	YOR012W	Q12351	137 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	YML133C	Q03099	1374 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	YLL067C	Q07888	1374 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	YLL066C	Q99208	1374 aa		5.87	□□□□□ -1.47
DEF1	YKL054C	COX3	P00420	269 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	CAR1	P00812	333 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	LEU4	P06208	619 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	SSA3	P09435	649 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	PDE1	P22434	369 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	MEK1	P24719	497 aa	Predicted RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	ADH7	P25377	361 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	HSP104	P31539	908 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	AAP1	P37898	856 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	YIR014W	P40570	242 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	COQ9	Q05779	260 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	VAC14	Q06708	880 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	GIS3	Q12418	502 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	TRP3	P00937	484 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	SRV2	P17555	526 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	ART10	P18634	518 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	PTK1	P36002	662 aa	Predicted RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	TOM71	P38825	639 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	PET100	P38958	111 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	RTR1	P40084	226 aa	Predicted RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	CHA4	P43634	648 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	YIP5	P53108	310 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	VPS73	P53142	486 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	COQ6	P53318	479 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	DBP6	P53734	629 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	YNL134C	P53912	376 aa	Known RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	KTR5	P53966	522 aa	Predicted RBP	5.86	□□□□□ -1.47
DEF1	YKL054C	MSC1	Q03104	513 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	ATC1	Q04005	294 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	IZH3	Q07959	543 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	YOL159C	Q08300	171 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	BAG7	Q12128	409 aa		5.86	□□□□□ -1.47
DEF1	YKL054C	RSR1	P13856	272 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	KGD2	P19262	463 aa	Predicted RBP	5.85	□□□□□ -1.47
DEF1	YKL054C	SEC15	P22224	910 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	ERG1	P32476	496 aa	Known RBP	5.85	□□□□□ -1.47
DEF1	YKL054C	YKR015C	P36111	568 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	PCA1	P38360	1216 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	FMO1	P38866	432 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	RPN11	P43588	306 aa	Known RBP	5.85	□□□□□ -1.47
DEF1	YKL054C	BRO1	P48582	844 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	SRL4	Q03085	281 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	CRT10	Q08226	957 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	ETT1	Q08421	412 aa	Known RBP	5.85	□□□□□ -1.47
DEF1	YKL054C	MTR10	Q99189	972 aa		5.85	□□□□□ -1.47
DEF1	YKL054C	COQ2	P32378	372 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	HIR2	P32480	875 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	CDC5	P32562	705 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	HES1	P35843	434 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	NUP133	P36161	1157 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	TAE1	P38340	232 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	IMD2	P38697	523 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	MSR1	P38714	643 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	SIP3	P38717	1229 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	FUN12	P39730	1002 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	NPA3	P47122	385 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	RPS15	Q01855	142 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	STD1	Q02794	444 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	EKI1	Q03764	534 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	CTK1	Q03957	528 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	MED2	Q12124	431 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	AHC1	Q12433	566 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	Q0010	Q9ZZX9	128 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	RPL31B	P0C2H9	113 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	BOS1	P25385	244 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	CDC20	P26309	610 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	SRB4	P32569	687 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	TRM2	P33753	639 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	SNU114	P36048	1008 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	YKL023W	P36103	277 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	KAE1	P36132	386 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	ECM4	P36156	370 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	PIH1	P38768	344 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	ELO1	P39540	310 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	UIP3	P39547	235 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	TRF5	P48561	642 aa	Known RBP	5.84	□□□□□ -1.47
DEF1	YKL054C	OCA2	P53949	197 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	SLG1	P54867	378 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	MFM1	Q02783	413 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	DCS1	Q06151	350 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	VAM3	Q12241	283 aa		5.84	□□□□□ -1.47
DEF1	YKL054C	GAL10	P04397	699 aa		5.83	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 21.6 ms