RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	SPE4	Q12455	300 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	ARP6	Q12509	438 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	YPT6	Q99260	215 aa		3.94	□□□□□ -1.78
UBX5	YDR330W	RPL7A	P05737	244 aa	Known RBP	3.93	□□□□□ -1.78
UBX5	YDR330W	CBP1	P07252	654 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	STE12	P13574	688 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	RAD57	P25301	460 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	SWI3	P32591	825 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	YEL043W	P32618	956 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	RRP1	P35178	278 aa	Predicted RBP	3.93	□□□□□ -1.78
UBX5	YDR330W	YFL015C	P43578	164 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	DPB11	P47027	764 aa	Predicted RBP	3.93	□□□□□ -1.78
UBX5	YDR330W	YML6	P51998	286 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	HRD3	Q05787	833 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	YDL057W	Q07379	328 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	PUS9	Q12069	462 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	RPL7B	Q12213	244 aa	Known RBP	3.93	□□□□□ -1.78
UBX5	YDR330W	Q0010	Q9ZZX9	128 aa		3.93	□□□□□ -1.78
UBX5	YDR330W	ARD1	P07347	238 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	PMA2	P19657	947 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	ADH7	P25377	361 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	PTC6	P25646	442 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	HXT1	P32465	570 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	SRB4	P32569	687 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	PHO88	P38264	188 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	DIA4	P38705	446 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	SMC2	P38989	1170 aa	Known RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	UIP3	P39547	235 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	YEL057C	P39983	233 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	MET18	P40469	1032 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	MET28	P40573	187 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	RPS7B	P48164	190 aa	Known RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	NBP1	P52919	319 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	RCF1	Q03713	159 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	RBA50	Q04418	439 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	BUD7	Q08754	746 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	LEA1	Q08963	238 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	FMP40	Q08968	688 aa	Predicted RBP	3.92	□□□□□ -1.78
UBX5	YDR330W	ISA2	Q12425	185 aa		3.92	□□□□□ -1.78
UBX5	YDR330W	CLN3	P13365	580 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CKI1	P20485	582 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CLB3	P24870	427 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	VID24	P38263	362 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CHS7	P38843	316 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	SMF1	P38925	575 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CCT4	P39078	528 aa	Known RBP	3.91	□□□□□ -1.78
UBX5	YDR330W	CCT6	P39079	546 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	ECM10	P39987	644 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	PKP1	P40530	394 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	ULP2	P40537	1034 aa	Predicted RBP	3.91	□□□□□ -1.78
UBX5	YDR330W	TDA10	P42938	290 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CTK2	P46962	323 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	DIA3	P52290	468 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	LIF1	P53150	421 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	RRB1	Q04225	511 aa	Known RBP	3.91	□□□□□ -1.78
UBX5	YDR330W	SOV1	Q04748	898 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	DAS2	Q12084	232 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	AVL9	Q12500	764 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	CSR2	Q12734	1121 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	YKL068W-A	Q3E826	78 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	YLR278C	Q05854	1341 aa		3.91	□□□□□ -1.78
UBX5	YDR330W	RPN13	O13563	156 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	MF(ALPHA)1	P01149	165 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	HEM1	P09950	548 aa	Predicted RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	RPO26	P20435	155 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	SAT4	P25333	603 aa	Known RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	YJU2	P28320	278 aa	Predicted RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	UGP1	P32861	499 aa	Known RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	SEF1	P34228	1148 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	OTU2	P38747	307 aa	Known RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	YJL068C	P40363	299 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	IRC24	P40580	263 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	SMC3	P47037	1230 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	YGR127W	P53275	312 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	YGR250C	P53316	781 aa	Known RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	JJJ1	P53863	590 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	SPH1	Q06160	661 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	CUR1	Q06469	252 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	YPR078C	Q06813	372 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	LUC7	Q07508	261 aa	Predicted RBP	3.9	□□□□□ -1.78
UBX5	YDR330W	YPL272C	Q08984	517 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	INP53	Q12271	1107 aa		3.9	□□□□□ -1.78
UBX5	YDR330W	PGK1	P00560	416 aa	Known RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	SAM1	P10659	382 aa	Known RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	EST1	P17214	699 aa	Predicted RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	REC107	P21651	314 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	PAP1	P29468	568 aa	Known RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	GPI10	P30777	616 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	NIP100	P33420	868 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	YMR124W	P39523	943 aa	Known RBP	3.9	□□□□□ -1.79
UBX5	YDR330W	FIS1	P40515	155 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	SSU1	P41930	458 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	FAR3	P46671	204 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	BTN2	P53286	410 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	TOF1	P53840	1238 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	GIS1	Q03833	894 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	CYK3	Q07533	885 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	MLH2	Q07980	695 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	SIL1	Q08199	421 aa		3.9	□□□□□ -1.79
UBX5	YDR330W	ATG29	Q12092	213 aa		3.9	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms