RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 HAUS2Q9NVX0 235 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SYNGAP1Q96PV0 1343 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CLASP2O75122 1294 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PCNX4Q63HM2 1172 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PPP4R3CPQ6ZMV5 832 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SSH3Q8TE77 659 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 C17orf50Q8WW18 174 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC87Q9NVE4 849 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 HPCAL4Q9UM19 191 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CARMIL3Q8ND23 1372 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 GRIN2AQ12879 1464 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 APOA1P02647 267 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 DDIT3P35638 169 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 IGHMBP2P38935 993 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 KSR2Q6VAB6 950 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 TBC1D1Q86TI0 1168 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MMGT1Q8N4V1 131 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ICA1LQ8NDH6 482 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 XAB2Q9HCS7 855 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PALMDQ9NP74 551 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SSX2IPQ9Y2D8 614 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SMAPO00193 183 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ADCY3O60266 1144 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KDM1AO60341 852 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PECAM1P16284 738 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PDCLQ13371 301 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KRT81Q14533 505 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PRAM1Q96QH2 718 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TMCO1Q9UM00 188 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PRG4Q92954 1404 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 NECTIN2Q92692 538 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 VPS16Q9H269 839 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PCDHA7Q9UN72 937 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 USP15Q9Y4E8 981 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 EIF4G3O43432 1585 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 XPO1O14980 1071 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ATF2P15336 505 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 LRRC8BQ6P9F7 803 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 BLOC1S6Q9UL45 172 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SMIM23A6NLE4 172 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 EXOC5O00471 708 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 GPTP24298 496 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 STAT1P42224 750 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 USH1GQ495M9 461 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KRT40Q6A162 431 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SYCP3Q8IZU3 236 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ROPN1BQ9BZX4 212 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ROPN1Q9HAT0 212 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ZMYM6O95789 1325 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 GRM8O00222 908 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PSMD14O00487 310 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ECEL1O95672 775 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 HORMAD1Q86X24 394 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 C2CD5Q86YS7 1000 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SAMD9LQ8IVG5 1584 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 FOXP1Q9H334 677 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 DCLRE1BQ9H816 532 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 NOD2Q9HC29 1040 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 STK17AQ9UEE5 414 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SAMM50Q9Y512 469 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ADGRG1Q9Y653 693 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SMIM31A0A1B0GVY4 71 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CCT8L1PA6NM43 557 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 GYG2O15488 501 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 POLR2DO15514 142 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 HNRNPRO43390 633 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 HAUS5O94927 633 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SERPINB2P05120 415 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 POLR2EP19388 210 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RFX1P22670 979 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RAD23BP54727 409 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 STX3Q13277 289 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RHOT2Q8IXI1 618 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CEP70Q8NHQ1 597 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 NUB1Q9Y5A7 615 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TRIM66O15016 1216 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CYTH3O43739 400 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 APOEP02649 317 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TNFAIP3P21580 790 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KCNA3P22001 575 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ADKP55263 362 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 BPIFB4P59827 614 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RIPK1Q13546 671 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PTGISQ16647 500 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CAVIN4Q5BKX8 364 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF473Q8WTR7 871 aaKnown RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TBC1D8O95759 1140 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 LSP1P33241 339 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CTCFP49711 727 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-220ENST00000641603 METTL24Q5JXM2 366 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RILPQ96NA2 401 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 RAB21Q9UL25 225 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 TSC22D4Q9Y3Q8 395 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SLC4A7Q9Y6M7 1214 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KCNK3O14649 394 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 PRLRP16471 622 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 SPATA21Q7Z572 469 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 KLHL7Q8IXQ5 586 aa5.07□□□□□ -1.6
SCN1A-220ENST00000641603 CDKL2Q92772 493 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms