RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 MORC4Q8TE76 937 aa22.93■■□□□ 1.26
CLN3-262ENST00000637699 DCAF4Q8WV16 495 aa22.93■■□□□ 1.26
CLN3-262ENST00000637699 TRMT13Q9NUP7 481 aaKnown RBP22.93■■□□□ 1.26
CLN3-262ENST00000637699 CYP2C9P11712 490 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 DUSP28Q4G0W2 176 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 VPS53Q5VIR6 699 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 PPP2R2DQ66LE6 453 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 ADAMTS19Q8TE59 1207 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 VWCEQ96DN2 955 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 WDR11Q9BZH6 1224 aa22.92■■□□□ 1.26
CLN3-262ENST00000637699 RANBP17Q9H2T7 1088 aaKnown RBP22.92■■□□□ 1.26
CLN3-262ENST00000637699 ADD3Q9UEY8 706 aaKnown RBP22.92■■□□□ 1.26
CLN3-262ENST00000637699 LCTP09848 1927 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 NFIBO00712 420 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 MYL3P08590 195 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 MX1P20591 662 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 ALDH5A1P51649 535 aaPredicted RBP22.91■■□□□ 1.26
CLN3-262ENST00000637699 MICALL1Q8N3F8 863 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 GPCPD1Q9NPB8 672 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 TOMM22Q9NS69 142 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 POLR3EQ9NVU0 708 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 ANAPC4Q9UJX5 808 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 PCDHB15Q9Y5E8 787 aa22.91■■□□□ 1.26
CLN3-262ENST00000637699 FRMPD2Q68DX3 1309 aaPredicted RBP22.9■■□□□ 1.26
CLN3-262ENST00000637699 PTPDC1A2A3K4 754 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 COL9A1P20849 921 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 SYDE2Q5VT97 1194 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 DEFB128Q7Z7B8 93 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 IL27Q8NEV9 243 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 PCDHA11Q9Y5I1 949 aa22.9■■□□□ 1.26
CLN3-262ENST00000637699 REV3LO60673 3130 aa22.89■■□□□ 1.26
CLN3-262ENST00000637699 TNKSO95271 1327 aa22.89■■□□□ 1.26
CLN3-262ENST00000637699 SUPT20HL2P0C7V6 817 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 ATP2A2P16615 1042 aaKnown RBP22.89■■□□□ 1.25
CLN3-262ENST00000637699 CALML3P27482 149 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 NOVP48745 357 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 PURAQ00577 322 aaKnown RBP22.89■■□□□ 1.25
CLN3-262ENST00000637699 TTLL4Q14679 1199 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 RRP12Q5JTH9 1297 aaKnown RBP22.89■■□□□ 1.25
CLN3-262ENST00000637699 BTNL9Q6UXG8 535 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 OR6J1Q8NGC5 347 aa22.89■■□□□ 1.25
CLN3-262ENST00000637699 UHRF1Q96T88 793 aaPredicted RBP22.89■■□□□ 1.25
CLN3-262ENST00000637699 GPHNQ9NQX3 736 aaPredicted RBP22.89■■□□□ 1.25
CLN3-262ENST00000637699 ORC4O43929 436 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 CPT1AP50416 773 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 FAM47CQ5HY64 1035 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 SLC30A10Q6XR72 485 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 PPP1R13LQ8WUF5 828 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 TMEM47Q9BQJ4 181 aa22.88■■□□□ 1.25
CLN3-262ENST00000637699 TSPYL2Q9H2G4 693 aaPredicted RBP22.88■■□□□ 1.25
CLN3-262ENST00000637699 TOP1P11387 765 aaKnown RBP22.87■■□□□ 1.25
CLN3-262ENST00000637699 MTG1Q9BT17 334 aaPredicted RBP22.87■■□□□ 1.25
CLN3-262ENST00000637699 NCOR1O75376 2440 aa22.87■■□□□ 1.25
CLN3-262ENST00000637699 RBM47A0AV96 593 aaKnown RBP22.86■■□□□ 1.25
CLN3-262ENST00000637699 PFKMP08237 780 aa22.86■■□□□ 1.25
CLN3-262ENST00000637699 FGRP09769 529 aa22.86■■□□□ 1.25
CLN3-262ENST00000637699 NBPF20Q3BBV1 942 aa22.86■■□□□ 1.25
CLN3-262ENST00000637699 CLEC4DQ8WXI8 215 aa22.86■■□□□ 1.25
CLN3-262ENST00000637699 BDP1A6H8Y1 2624 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 LOC102724159A0A0B4J2E5 919 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 RFXAPO00287 272 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 PDE4DQ08499 809 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 PWP2Q15269 919 aaKnown RBP22.85■■□□□ 1.25
CLN3-262ENST00000637699 ALX1Q15699 326 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 TMEM67Q5HYA8 995 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 RNF207Q6ZRF8 634 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 CERS4Q9HA82 394 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 RAPGEFL1Q9UHV5 662 aa22.85■■□□□ 1.25
CLN3-262ENST00000637699 XIRP2A4UGR9 3374 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 SCN5AQ14524 2016 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 FGAP02671 866 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 CA3P07451 260 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 ACTN1P12814 892 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 PPP2R5BQ15173 497 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 BRDTQ58F21 947 aaPredicted RBP22.84■■□□□ 1.25
CLN3-262ENST00000637699 COPS5Q92905 334 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 EVI5LQ96CN4 794 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 HELLSQ9NRZ9 838 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 ZBTB47Q9UFB7 747 aaPredicted RBP22.84■■□□□ 1.25
CLN3-262ENST00000637699 TRANK1O15050 2925 aa22.84■■□□□ 1.25
CLN3-262ENST00000637699 SALL3Q9BXA9 1300 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 PDHBP11177 359 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 RPS6P62753 249 aaKnown RBP22.83■■□□□ 1.25
CLN3-262ENST00000637699 TFF2Q03403 129 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 SKIV2LQ15477 1246 aaKnown RBP22.83■■□□□ 1.25
CLN3-262ENST00000637699 RETREG2Q8NC44 543 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 FAM227BQ96M60 508 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 NECAB3Q96P71 396 aaPredicted RBP22.83■■□□□ 1.25
CLN3-262ENST00000637699 TCP11L1Q9NUJ3 509 aa22.83■■□□□ 1.25
CLN3-262ENST00000637699 RAD50Q92878 1312 aa22.82■■□□□ 1.24
CLN3-262ENST00000637699 TCF20Q9UGU0 1960 aaKnown RBP22.82■■□□□ 1.24
CLN3-262ENST00000637699 CHMP4BP1P59074 171 aa22.82■■□□□ 1.24
CLN3-262ENST00000637699 ANKRD45Q5TZF3 282 aa22.82■■□□□ 1.24
CLN3-262ENST00000637699 SCFD2Q8WU76 684 aa22.82■■□□□ 1.24
CLN3-262ENST00000637699 MPHOSPH6Q99547 160 aaKnown RBP22.82■■□□□ 1.24
CLN3-262ENST00000637699 FTOQ9C0B1 505 aaKnown RBP eCLIP22.82■■□□□ 1.24
CLN3-262ENST00000637699 A6NJR5 290 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 NKRFO15226 690 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLN3-262ENST00000637699 KPNA6O60684 536 aa22.81■■□□□ 1.24
CLN3-262ENST00000637699 IQCF3P0C7M6 154 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms