RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 IQSEC1Q6DN90 963 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 FBXO11Q86XK2 927 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 RIOX1Q9H6W3 641 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 LY9Q9HBG7 655 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 VAT1LQ9HCJ6 419 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 TRIOBPQ9H2D6 2365 aa22.41■■□□□ 1.18
CLN3-260ENST00000637578 IRX5P78411 483 aaPredicted RBP22.4■■□□□ 1.18
CLN3-260ENST00000637578 COL9A3Q14050 684 aaPredicted RBP22.4■■□□□ 1.18
CLN3-260ENST00000637578 MAP3K14Q99558 947 aa22.4■■□□□ 1.18
CLN3-260ENST00000637578 PDGFCQ9NRA1 345 aa22.4■■□□□ 1.18
CLN3-260ENST00000637578 ZBTB5O15062 677 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 DHX16O60231 1041 aaKnown RBP22.39■■□□□ 1.18
CLN3-260ENST00000637578 SMPD1P17405 629 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 MCM5P33992 734 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 MAGEA10P43363 369 aaPredicted RBP22.39■■□□□ 1.18
CLN3-260ENST00000637578 CASC1Q6TDU7 716 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 FBXO16Q8IX29 292 aaPredicted RBP22.39■■□□□ 1.18
CLN3-260ENST00000637578 TBC1D5Q92609 795 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 AMNQ9BXJ7 453 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 SPC25Q9HBM1 224 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 MRPL11Q9Y3B7 192 aaKnown RBP22.39■■□□□ 1.18
CLN3-260ENST00000637578 Q9Y3F1 56 aa22.39■■□□□ 1.18
CLN3-260ENST00000637578 LRRC37A2A6NM11 1700 aa22.39■■□□□ 1.17
CLN3-260ENST00000637578 RBM47A0AV96 593 aaKnown RBP22.38■■□□□ 1.17
CLN3-260ENST00000637578 PRC1O43663 620 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 PPP1R11O60927 126 aaPredicted RBP22.38■■□□□ 1.17
CLN3-260ENST00000637578 C6orf222P0C671 652 aaPredicted RBP22.38■■□□□ 1.17
CLN3-260ENST00000637578 GHRHRQ02643 423 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 TRIM60Q495X7 471 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 EEPD1Q7L9B9 569 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 CATIPQ7Z7H3 387 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 MCF2L2Q86YR7 1114 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 PCSK9Q8NBP7 692 aaKnown RBP22.38■■□□□ 1.17
CLN3-260ENST00000637578 TMEM87BQ96K49 555 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 ATP11BQ9Y2G3 1177 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 CYTH3O43739 400 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 TSGA10IPQ3SY00 556 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 TMTC2Q8N394 836 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 NUP133Q8WUM0 1156 aa22.38■■□□□ 1.17
CLN3-260ENST00000637578 GPHNQ9NQX3 736 aaPredicted RBP22.38■■□□□ 1.17
CLN3-260ENST00000637578 SH2B2O14492 632 aaPredicted RBP22.37■■□□□ 1.17
CLN3-260ENST00000637578 OPLAHO14841 1288 aa22.37■■□□□ 1.17
CLN3-260ENST00000637578 LIFRP42702 1097 aa22.37■■□□□ 1.17
CLN3-260ENST00000637578 GNASQ5JWF2 1037 aa22.37■■□□□ 1.17
CLN3-260ENST00000637578 SYTL5Q8TDW5 730 aaPredicted RBP22.37■■□□□ 1.17
CLN3-260ENST00000637578 ELP1O95163 1332 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 DDAH1O94760 285 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 ASGR1P07306 291 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 DUSP28Q4G0W2 176 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 TMEM63BQ5T3F8 832 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 RNF20Q5VTR2 975 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 TLK2Q86UE8 772 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 STARD7Q9NQZ5 370 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 COL20A1Q9P218 1284 aa22.36■■□□□ 1.17
CLN3-260ENST00000637578 B4DLN1 442 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 MRPL12P52815 198 aaKnown RBP22.35■■□□□ 1.17
CLN3-260ENST00000637578 TLE2Q04725 743 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 ANKRD33Q7Z3H0 272 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 ZNF654Q8IZM8 581 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 TOX2Q96NM4 488 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 MPHOSPH6Q99547 160 aaKnown RBP22.35■■□□□ 1.17
CLN3-260ENST00000637578 PCDH10Q9P2E7 1040 aa22.35■■□□□ 1.17
CLN3-260ENST00000637578 SMARCA1P28370 1054 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 HSD17B4P51659 736 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 PDE4DQ08499 809 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 NOL8Q76FK4 1167 aaKnown RBP22.34■■□□□ 1.17
CLN3-260ENST00000637578 SAMD3Q8N6K7 520 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 GLT1D1Q96MS3 346 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 TAAR1Q96RJ0 339 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 PIGSQ96S52 555 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 PDLIM7Q9NR12 457 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 MAP3K20Q9NYL2 800 aaKnown RBP22.34■■□□□ 1.17
CLN3-260ENST00000637578 PCDHA1Q9Y5I3 950 aa22.34■■□□□ 1.17
CLN3-260ENST00000637578 PNMA6FA0A0J9YX94 578 aa22.33■■□□□ 1.17
CLN3-260ENST00000637578 DYNC1LI2O43237 492 aaPredicted RBP22.33■■□□□ 1.17
CLN3-260ENST00000637578 PTGS1P23219 599 aa22.33■■□□□ 1.17
CLN3-260ENST00000637578 CDK7P50613 346 aa22.33■■□□□ 1.17
CLN3-260ENST00000637578 NSUN6Q8TEA1 469 aaKnown RBP22.33■■□□□ 1.17
CLN3-260ENST00000637578 WDR11Q9BZH6 1224 aa22.33■■□□□ 1.17
CLN3-260ENST00000637578 AP5M1Q9H0R1 490 aa22.33■■□□□ 1.17
CLN3-260ENST00000637578 TRIM43BA6NCK2 446 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 BEX3Q00994 111 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 TRAF1Q13077 416 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 FSCN1Q16658 493 aaKnown RBP22.33■■□□□ 1.16
CLN3-260ENST00000637578 RASEFQ8IZ41 740 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 TRIM43Q96BQ3 446 aaPredicted RBP22.33■■□□□ 1.16
CLN3-260ENST00000637578 IWS1Q96ST2 819 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 SPZ1Q9BXG8 430 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 PRKAG2Q9UGJ0 569 aa22.33■■□□□ 1.16
CLN3-260ENST00000637578 KIF5BP33176 963 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 MDM2Q00987 491 aaPredicted RBP22.32■■□□□ 1.16
CLN3-260ENST00000637578 EXOSC10Q01780 885 aaKnown RBP22.32■■□□□ 1.16
CLN3-260ENST00000637578 SH3RF1Q7Z6J0 888 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 SGMS1Q86VZ5 419 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 KCNB2Q92953 911 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 NEK1Q96PY6 1258 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 MYL10Q9BUA6 226 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 MYH6P13533 1939 aa22.32■■□□□ 1.16
CLN3-260ENST00000637578 HOMER1Q86YM7 354 aa22.31■■□□□ 1.16
CLN3-260ENST00000637578 CTCFLQ8NI51 663 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms