RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 ELF1P32519 619 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 EXOSC9Q06265 439 aaKnown RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CYTH1Q15438 398 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ARL13BQ3SXY8 428 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ISM2Q6H9L7 571 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 FOPNLQ96NB1 174 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 MCM9Q9NXL9 1143 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 GALNT8Q9NY28 637 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CAPN11Q9UMQ6 739 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 E2F6O75461 281 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 SP100P23497 879 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 DEPDC1Q5TB30 811 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ADCK1Q86TW2 530 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 IFNLR1Q8IU57 520 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CNPY4Q8N129 248 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 GDAP1Q8TB36 358 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 LRRC8CQ8TDW0 803 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 NCLNQ969V3 563 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 PRAM1Q96QH2 718 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF408Q9H9D4 720 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 AMFRQ9UKV5 643 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM33Q9UPN9 1127 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CHMP2BQ9UQN3 213 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 NEMP1O14524 444 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ZSCAN9O15535 394 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RHOXF2BP0C7M4 288 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 HCLS1P14317 486 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF18P17022 549 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ARL4DP49703 201 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 THOC5Q13769 683 aaKnown RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 LVRNQ6Q4G3 990 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 NT5DC4Q86YG4 428 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RELL1Q8IUW5 271 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 DIS3LQ8TF46 1054 aaKnown RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 C18orf25Q96B23 403 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 OTULINQ96BN8 352 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RHOXF2Q9BQY4 288 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 JPH2Q9BR39 696 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 F8W031 263 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 BFSP2Q13515 415 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 SLITRK6Q9H5Y7 841 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 LZTFL1Q9NQ48 299 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CAPN7Q9Y6W3 813 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ABCC11Q96J66 1382 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 TADA3O75528 432 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 TAC1P20366 129 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CUL1Q13616 776 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ALDH1L2Q3SY69 923 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 KRT40Q6A162 431 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RNF169Q8NCN4 708 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 DEPTORQ8TB45 409 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM11Q96F44 468 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ANGPTL2Q9UKU9 493 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 IQSEC3Q9UPP2 1182 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 LZTS3O60299 673 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 KRT14P02533 472 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 EPHB1P54762 984 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 PARP10Q53GL7 1025 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 DTX3LQ8TDB6 740 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 FAM129AQ9BZQ8 928 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 KRCC1Q9NPI7 259 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 GJA3Q9Y6H8 435 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ELP1O95163 1332 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 TMEM232C9JQI7 657 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 DCTN3O75935 186 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 PDE1BQ01064 536 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 MECOMQ03112 1051 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 STX3Q13277 289 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 CBFBQ13951 182 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RPS6KA1Q15418 735 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF394Q53GI3 561 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 FGD2Q7Z6J4 655 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 ANKRD49Q8WVL7 239 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 NT5C3AQ9H0P0 336 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 YY1AP1Q9H869 796 aa6.51□□□□□ -1.37
SCN1A-212ENST00000636194 RTCBQ9Y3I0 505 aaKnown RBP6.51□□□□□ -1.37
SCN1A-212ENST00000636194 FAM83GA6ND36 823 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SMARCA5O60264 1052 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PRMT3O60678 531 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 IFNB1P01574 187 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TRPC1P48995 793 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PDE6CP51160 858 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PPP2R3AQ06190 1150 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ECHDC1Q9NTX5 307 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TLK1Q9UKI8 766 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PCDHB8Q9UN66 801 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 EXOC6BQ9Y2D4 811 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 PCDHB13Q9Y5F0 798 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TTC21BQ7Z4L5 1316 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 CHD4Q14839 1912 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SYNDIG1LA6NDD5 238 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 H0Y626 953 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM16O95361 564 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 SOX5P35711 763 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 ADCY8P40145 1251 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 IL9RQ01113 521 aa6.5□□□□□ -1.37
SCN1A-212ENST00000636194 YWHAHQ04917 246 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-212ENST00000636194 KRT71Q3SY84 523 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms