RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	CRISPLD2	Q9H0B8	497 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PRO3102	Q9H379	93 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	JMJD4	Q9H9V9	463 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	AS3MT	Q9HBK9	375 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BRMS1	Q9HCU9	246 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GPCPD1	Q9NPB8	672 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SH3GLB2	Q9NR46	395 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GINM1	Q9NU53	330 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BARHL2	Q9NY43	387 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GOLGA6L4	A6NEF3	574 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587		F5H6K3	240 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	YEATS4	O95619	227 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NDUFB10	O96000	172 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	KRT2	P35908	639 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SLC16A2	P36021	539 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	KLRC3	Q07444	240 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SF3A1	Q15459	793 aa	Known RBP	10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NECAB2	Q7Z6G3	386 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCDC84	Q86UT8	332 aa	Predicted RBP	10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ADGRF4	Q8IZF3	695 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ZNF280C	Q8ND82	737 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	DEFB118	Q96PH6	123 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PAK6	Q9NQU5	681 aa	Predicted RBP	10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PCDHA7	Q9UN72	937 aa		10.89	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CEP290	O15078	2479 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	FSD2	A1L4K1	749 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SLC39A14	Q15043	492 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SH3D19	Q5HYK7	790 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GPATCH4	Q5T3I0	446 aa	Known RBP	10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SLFN13	Q68D06	897 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HEATR3	Q7Z4Q2	680 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HOMER1	Q86YM7	354 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ANKRD13C	Q8N6S4	541 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	DCAF4	Q8WV16	495 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GMCL1	Q96IK5	515 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NUP88	Q99567	741 aa	Predicted RBP	10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GOLPH3L	Q9H4A5	285 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	VAT1L	Q9HCJ6	419 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TMX2	Q9Y320	296 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PCDHB6	Q9Y5E3	794 aa		10.88	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GABBR2	O75899	941 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ELN	P15502	786 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ZNF445	P59923	1031 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SPP2	Q13103	211 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	DAGLB	Q8NCG7	672 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SYAP1	Q96A49	352 aa	Predicted RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RRP36	Q96EU6	259 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	WDR18	Q9BV38	432 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ZMYND12	Q9H0C1	365 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SEC63	Q9UGP8	760 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SYNPO2	Q9UMS6	1093 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MYH7B	A7E2Y1	1941 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CENPF	P49454	3210 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PTPRF	P10586	1907 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RLF	Q13129	1914 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MKI67	P46013	3256 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	USP17L10	C9JJH3	530 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SPTLC2	O15270	562 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RAD21	O60216	631 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NR1I2	O75469	434 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HMGCR	P04035	888 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CALML3	P27482	149 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	NLRP5	P59047	1200 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SNW1	Q13573	536 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCDC96	Q2M329	555 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TRMT44	Q8IYL2	757 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BLID	Q8IZY5	108 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	FAM177A1	Q8N128	213 aa	Predicted RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCDC148	Q8NFR7	591 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RASGRP4	Q8TDF6	673 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HMX1	Q9NP08	348 aa	Predicted RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PCDHA4	Q9UN74	947 aa		10.87	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RPTOR	Q8N122	1335 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	C19orf81	C9J6K1	198 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	BMP8B	P34820	402 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SLC1A4	P43007	532 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	STK38	Q15208	465 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	RILPL1	Q5EBL4	403 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TREML2	Q5T2D2	321 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ADAL	Q6DHV7	355 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SPICE1	Q8N0Z3	855 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ENGASE	Q8NFI3	743 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	KCNG4	Q8TDN1	519 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	CCDC12	Q8WUD4	166 aa	Predicted RBP	10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ARHGEF10L	Q9HCE6	1279 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MORF4L1	Q9UBU8	362 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ISY1	Q9ULR0	285 aa	Known RBP	10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MRVI1	Q9Y6F6	885 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	TRIOBP	Q9H2D6	2365 aa		10.86	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PNMA6F	A0A0J9YX94	578 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ESYT2	A0FGR8	921 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	SYCE3	A1L190	88 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	PPP6R2	O75170	966 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	ASNS	P08243	561 aa		10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	MARCKS	P29966	332 aa	Predicted RBP	10.85	□□□□□ -0.67
PDLIM5-223	ENST00000627587	HOXA7	P31268	230 aa	Predicted RBP	10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms