RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 VTA1Q9NP79 307 aa17.43■□□□□ 0.38
PNKP-218ENST00000625299 CCPG1Q9ULG6 757 aa17.43■□□□□ 0.38
PNKP-218ENST00000625299 STX8Q9UNK0 236 aa17.43■□□□□ 0.38
PNKP-218ENST00000625299 Q9Y3F1 56 aa17.43■□□□□ 0.38
PNKP-218ENST00000625299 TNKSO95271 1327 aa17.43■□□□□ 0.38
PNKP-218ENST00000625299 PATL2C9JE40 543 aaKnown RBP17.42■□□□□ 0.38
PNKP-218ENST00000625299 ZFYP08048 801 aaPredicted RBP17.42■□□□□ 0.38
PNKP-218ENST00000625299 PFKMP08237 780 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 KRT40Q6A162 431 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 PPP1R13LQ8WUF5 828 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 ARNTL2Q8WYA1 636 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 NAPBQ9H115 298 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 CHMP4BQ9H444 224 aaKnown RBP17.42■□□□□ 0.38
PNKP-218ENST00000625299 PRR12Q9ULL5 1215 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 MTCH2Q9Y6C9 303 aa17.42■□□□□ 0.38
PNKP-218ENST00000625299 ERC2O15083 957 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 SUPT20HL2P0C7V6 817 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 ACTN1P12814 892 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 PPARAQ07869 468 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 CCDC96Q2M329 555 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 SEC62Q99442 399 aaKnown RBP17.41■□□□□ 0.38
PNKP-218ENST00000625299 GPHNQ9NQX3 736 aaPredicted RBP17.41■□□□□ 0.38
PNKP-218ENST00000625299 POLR3EQ9NVU0 708 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 TRANK1O15050 2925 aa17.41■□□□□ 0.38
PNKP-218ENST00000625299 EPOPA6NHQ4 379 aa17.4■□□□□ 0.38
PNKP-218ENST00000625299 TSPY2A6NKD2 308 aa17.4■□□□□ 0.38
PNKP-218ENST00000625299 DUSP28Q4G0W2 176 aa17.4■□□□□ 0.38
PNKP-218ENST00000625299 OR6J1Q8NGC5 347 aa17.4■□□□□ 0.38
PNKP-218ENST00000625299 WDR11Q9BZH6 1224 aa17.4■□□□□ 0.38
PNKP-218ENST00000625299 FTOQ9C0B1 505 aaKnown RBP eCLIP17.4■□□□□ 0.38
PNKP-218ENST00000625299 TANC1Q9C0D5 1861 aa17.39■□□□□ 0.38
PNKP-218ENST00000625299 NMT2O60551 498 aa17.39■□□□□ 0.37
PNKP-218ENST00000625299 CPT1AP50416 773 aa17.39■□□□□ 0.37
PNKP-218ENST00000625299 ALDH5A1P51649 535 aaPredicted RBP17.39■□□□□ 0.37
PNKP-218ENST00000625299 PURAQ00577 322 aaKnown RBP17.39■□□□□ 0.37
PNKP-218ENST00000625299 BAATQ14032 418 aaPredicted RBP17.39■□□□□ 0.37
PNKP-218ENST00000625299 RCSD1Q6JBY9 416 aa17.39■□□□□ 0.37
PNKP-218ENST00000625299 SLC9A7Q96T83 725 aa17.39■□□□□ 0.37
PNKP-218ENST00000625299 MTG1Q9BT17 334 aaPredicted RBP17.39■□□□□ 0.37
PNKP-218ENST00000625299 EPHX3Q9H6B9 360 aa17.39■□□□□ 0.37
PNKP-218ENST00000625299 PTPDC1A2A3K4 754 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 PLA2G6O60733 806 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 ARHGEF15O94989 841 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 ICAM1P05362 532 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 CHMP4BP1P59074 171 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 CTDSPL2Q05D32 466 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 LRRFIP1Q32MZ4 808 aaKnown RBP17.38■□□□□ 0.37
PNKP-218ENST00000625299 PPP4R3BQ5MIZ7 849 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 RETREG2Q8NC44 543 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 ADD3Q9UEY8 706 aaKnown RBP17.38■□□□□ 0.37
PNKP-218ENST00000625299 HCN4Q9Y3Q4 1203 aa17.38■□□□□ 0.37
PNKP-218ENST00000625299 NFIBO00712 420 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 SLC16A2P36021 539 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 TAP1Q03518 808 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 NBPF20Q3BBV1 942 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 MORC4Q8TE76 937 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 FSD1Q9BTV5 496 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 INCENPQ9NQS7 918 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 COG5Q9UP83 839 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 NOD1Q9Y239 953 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 SCN10AQ9Y5Y9 1956 aa17.37■□□□□ 0.37
PNKP-218ENST00000625299 COL4A4P53420 1690 aaPredicted RBP17.36■□□□□ 0.37
PNKP-218ENST00000625299 KIF28PB7ZC32 967 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 RANBP6O60518 1105 aaKnown RBP17.36■□□□□ 0.37
PNKP-218ENST00000625299 IQCF3P0C7M6 154 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 POU3F3P20264 500 aaPredicted RBP17.36■□□□□ 0.37
PNKP-218ENST00000625299 CALML3P27482 149 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 RFC2P35250 354 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 PPP2R5BQ15173 497 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 BRDTQ58F21 947 aaPredicted RBP17.36■□□□□ 0.37
PNKP-218ENST00000625299 TTBK2Q6IQ55 1244 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 SLC30A10Q6XR72 485 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 HERC6Q8IVU3 1022 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 HLA-CQ95604 372 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 LRFN3Q9BTN0 628 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 IL17RBQ9NRM6 502 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 RAD50Q92878 1312 aa17.36■□□□□ 0.37
PNKP-218ENST00000625299 TET1Q8NFU7 2136 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 PDE4DQ08499 809 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 GRB10Q13322 594 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 SPRED2Q7Z698 418 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 PHOSPHO2Q8TCD6 241 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 DCAF4Q8WV16 495 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 COPS5Q92905 334 aa17.35■□□□□ 0.37
PNKP-218ENST00000625299 RANBP17Q9H2T7 1088 aaKnown RBP17.35■□□□□ 0.37
PNKP-218ENST00000625299 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.35■□□□□ 0.37
PNKP-218ENST00000625299 FRMPD2Q68DX3 1309 aaPredicted RBP17.35■□□□□ 0.37
PNKP-218ENST00000625299 PITPNM1O00562 1244 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 TLL1O43897 1013 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 KCNJ6P48051 423 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 PTPRSQ13332 1948 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 BFSP2Q13515 415 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 TRIP12Q14669 1992 aaPredicted RBP17.34■□□□□ 0.37
PNKP-218ENST00000625299 TMEM31Q5JXX7 168 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 C20orf194Q5TEA3 1177 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 SYDE2Q5VT97 1194 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 GPCPD1Q9NPB8 672 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 TOMM22Q9NS69 142 aa17.34■□□□□ 0.37
PNKP-218ENST00000625299 RBM47A0AV96 593 aaKnown RBP17.33■□□□□ 0.36
PNKP-218ENST00000625299 HOXD11P31277 338 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms