RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LAD1O00515 517 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 ZBTB5O15062 677 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 ARHGAP6O43182 974 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 SMARCA1P28370 1054 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 PRPHP41219 470 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 RRP1BQ14684 758 aaKnown RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 SLC15A2Q16348 729 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 QRICH1Q2TAL8 776 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 FILIP1LQ4L180 1135 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 SLFN13Q68D06 897 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 ADSSL1Q8N142 457 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 TRIM9Q9C026 710 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 SLC39A2Q9NP94 309 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 ZBTB12Q9Y330 459 aaPredicted RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 MARCH6O60337 910 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 GYPCP04921 128 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 COPB1P53618 953 aaKnown RBP11.93□□□□□ -0.5
CUX1-221ENST00000622516 TRIM65Q6PJ69 517 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 TRIM47Q96LD4 638 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 MTMR9Q96QG7 549 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 LZTFL1Q9NQ48 299 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 PCDHA1Q9Y5I3 950 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 MYH4Q9Y623 1939 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 NRXN2Q9P2S2 1712 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 GH2P01242 217 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 UBXN1Q04323 297 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 ICA1Q05084 483 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 ECM1Q16610 540 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 RAD9BQ6WBX8 426 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 KCNK18Q7Z418 384 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 KCND1Q9NSA2 647 aa11.93□□□□□ -0.5
CUX1-221ENST00000622516 ESYT2A0FGR8 921 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 PBX1P40424 430 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 ETF1P62495 437 aaKnown RBP11.92□□□□□ -0.5
CUX1-221ENST00000622516 GRB10Q13322 594 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CDAN1Q8IWY9 1227 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 C7orf43Q8WVR3 580 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CUL5Q93034 780 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CTAGE1Q96RT6 745 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 WDR24Q96S15 920 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 RIC8AQ9NPQ8 531 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 SMCHD1A6NHR9 2005 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 F5H6K3 240 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 STX10O60499 249 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 IDEP14735 1019 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 KLRC3Q07444 240 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 GPATCH4Q5T3I0 446 aaKnown RBP11.92□□□□□ -0.5
CUX1-221ENST00000622516 STYK1Q6J9G0 422 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 GIMAP8Q8ND71 665 aaPredicted RBP11.92□□□□□ -0.5
CUX1-221ENST00000622516 GLIS3Q8NEA6 775 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 SNX29Q8TEQ0 813 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CALML4Q96GE6 196 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CDK5RAP3Q96JB5 506 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 AK8Q96MA6 479 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 PNMA5Q96PV4 448 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 CSRNP1Q96S65 589 aa11.92□□□□□ -0.5
CUX1-221ENST00000622516 MRPL44Q9H9J2 332 aaKnown RBP11.92□□□□□ -0.5
CUX1-221ENST00000622516 DDX25Q9UHL0 483 aaKnown RBP11.92□□□□□ -0.5
CUX1-221ENST00000622516 RHOBTB3O94955 611 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 ABL1P00519 1130 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 SSBP05455 408 aaKnown RBP eCLIP11.91□□□□□ -0.5
CUX1-221ENST00000622516 GNG11P61952 73 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 RAD51AP2Q09MP3 1159 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CDC37Q16543 378 aaPredicted RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 ABCB5Q2M3G0 1257 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 PPP4R3BQ5MIZ7 849 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 ANKRD40Q6AI12 368 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 GPIHBP1Q8IV16 184 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 PDCL2Q8N4E4 241 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CNKSR2Q8WXI2 1034 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 HAS1Q92839 578 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CNKSR1Q969H4 720 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 P2RX7Q99572 595 aaKnown RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 KANSL2Q9H9L4 492 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 ZNF277Q9NRM2 450 aaPredicted RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 BLOC1S4Q9NUP1 217 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 EXOC1Q9NV70 894 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 MYMKA6NI61 221 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 SPDYE4A6NLX3 237 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 URI1O94763 535 aaPredicted RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 ECE1P42892 770 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 MRPL12P52815 198 aaKnown RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 ELF2Q15723 593 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CT47A1Q5JQC4 288 aaPredicted RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 CSGALNACT2Q8N6G5 542 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CCDC17Q96LX7 622 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 EHD4Q9H223 541 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 DHX36Q9H2U1 1008 aaKnown RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 LIMA1Q9UHB6 759 aaKnown RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 A0A1W2PRG0 241 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 PSMA7O14818 248 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 MFAP3LO75121 409 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 KLK7P49862 253 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 CACNB1Q02641 598 aaPredicted RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 LRRC41Q15345 812 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 ZYXQ15942 572 aaKnown RBP11.91□□□□□ -0.5
CUX1-221ENST00000622516 DEFB132Q7Z7B7 95 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 IDI2Q9BXS1 227 aa11.91□□□□□ -0.5
CUX1-221ENST00000622516 BCCIPQ9P287 314 aaKnown RBP eCLIP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms