RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 MICALL2Q8IY33 904 aa22.75■■□□□ 1.23
MMP28-207ENST00000619655 CACTINQ8WUQ7 758 aaKnown RBP22.75■■□□□ 1.23
MMP28-207ENST00000619655 DDX25Q9UHL0 483 aaKnown RBP22.75■■□□□ 1.23
MMP28-207ENST00000619655 TMX2Q9Y320 296 aa22.75■■□□□ 1.23
MMP28-207ENST00000619655 UBASH3AP57075 661 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 LRRC15Q8TF66 581 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 DPF2Q92785 391 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 MTMR9Q96QG7 549 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 GLIS2Q9BZE0 524 aaPredicted RBP22.74■■□□□ 1.23
MMP28-207ENST00000619655 PRR12Q9ULL5 1215 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 ASTN2O75129 1339 aaPredicted RBP22.74■■□□□ 1.23
MMP28-207ENST00000619655 COBLO75128 1261 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 CDK11BP21127 795 aaKnown RBP22.74■■□□□ 1.23
MMP28-207ENST00000619655 CAP2P40123 477 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 PRELPP51888 382 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 ORC2Q13416 577 aaPredicted RBP22.74■■□□□ 1.23
MMP28-207ENST00000619655 PTPN21Q16825 1174 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 MED15Q96RN5 788 aa22.74■■□□□ 1.23
MMP28-207ENST00000619655 POTEMA6NI47 508 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 MARCH6O60337 910 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 RPN1P04843 607 aaKnown RBP22.73■■□□□ 1.23
MMP28-207ENST00000619655 TMEM266Q2M3C6 531 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 ENOX1Q8TC92 643 aaKnown RBP22.73■■□□□ 1.23
MMP28-207ENST00000619655 NAP1L5Q96NT1 182 aaPredicted RBP22.73■■□□□ 1.23
MMP28-207ENST00000619655 LRWD1Q9UFC0 647 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 TBC1D12O60347 775 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 PTGER2P43116 358 aa22.73■■□□□ 1.23
MMP28-207ENST00000619655 DHX8Q14562 1220 aaKnown RBP22.73■■□□□ 1.23
MMP28-207ENST00000619655 NOLC1Q14978 699 aaKnown RBP eCLIP22.73■■□□□ 1.23
MMP28-207ENST00000619655 SAMSN1Q9NSI8 373 aaKnown RBP22.73■■□□□ 1.23
MMP28-207ENST00000619655 SYNRGQ9UMZ2 1314 aa22.72■■□□□ 1.23
MMP28-207ENST00000619655 IGSF22Q8N9C0 903 aa22.72■■□□□ 1.23
MMP28-207ENST00000619655 KIFC2Q96AC6 838 aa22.72■■□□□ 1.23
MMP28-207ENST00000619655 ANO3Q9BYT9 981 aa22.72■■□□□ 1.23
MMP28-207ENST00000619655 PGAP2Q9UHJ9 254 aa22.72■■□□□ 1.23
MMP28-207ENST00000619655 MEIS2O14770 477 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 KIAA1524Q8TCG1 905 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 GLT8D2Q9H1C3 349 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 CNOT7Q9UIV1 285 aaKnown RBP22.71■■□□□ 1.23
MMP28-207ENST00000619655 CTNND2Q9UQB3 1225 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 MAPK8IP1Q9UQF2 711 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 ERCC5P28715 1186 aaPredicted RBP22.71■■□□□ 1.23
MMP28-207ENST00000619655 ZNF280AP59817 542 aaPredicted RBP22.71■■□□□ 1.23
MMP28-207ENST00000619655 PPP4R3AQ6IN85 833 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 CCDC174Q6PII3 467 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 LRRC8AQ8IWT6 810 aa22.71■■□□□ 1.23
MMP28-207ENST00000619655 PPP1R3GB7ZBB8 358 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 RPS12P25398 132 aaKnown RBP22.7■■□□□ 1.22
MMP28-207ENST00000619655 HOXA13P31271 388 aaPredicted RBP22.7■■□□□ 1.22
MMP28-207ENST00000619655 BTNL9Q6UXG8 535 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 CALML4Q96GE6 196 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 MMTAG2Q9BU76 263 aaKnown RBP22.7■■□□□ 1.22
MMP28-207ENST00000619655 DNTTIP2Q5QJE6 756 aaKnown RBP22.7■■□□□ 1.22
MMP28-207ENST00000619655 FEZ1Q99689 392 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 VCPKMTQ9H867 229 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 RMND1Q9NWS8 449 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 SYNPO2Q9UMS6 1093 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 GDAQ9Y2T3 454 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 SMCHD1A6NHR9 2005 aa22.7■■□□□ 1.22
MMP28-207ENST00000619655 ASNSP08243 561 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 FXR2P51116 673 aaKnown RBP eCLIP22.69■■□□□ 1.22
MMP28-207ENST00000619655 TNFAIP1Q13829 316 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 P2RX7Q99572 595 aaKnown RBP22.69■■□□□ 1.22
MMP28-207ENST00000619655 RAB34Q9BZG1 259 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 KBTBD4Q9NVX7 518 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 HACL1Q9UJ83 578 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 CBFA2T2O43439 604 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 CDK5RAP3Q96JB5 506 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 ZNF341Q9BYN7 854 aa22.69■■□□□ 1.22
MMP28-207ENST00000619655 SPDYE3A6NKU9 549 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 OFD1O75665 1012 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 ZNF658Q5TYW1 1059 aaPredicted RBP22.68■■□□□ 1.22
MMP28-207ENST00000619655 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.68■■□□□ 1.22
MMP28-207ENST00000619655 HAS1Q92839 578 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 ZNF541Q9H0D2 1346 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 FZD9O00144 591 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 SNX29Q8TEQ0 813 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 TEPSINQ96N21 525 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 SH2D4AQ9H788 454 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 FBXO28Q9NVF7 368 aa22.68■■□□□ 1.22
MMP28-207ENST00000619655 GCFC2P16383 781 aaKnown RBP22.67■■□□□ 1.22
MMP28-207ENST00000619655 ZNF18P17022 549 aa22.67■■□□□ 1.22
MMP28-207ENST00000619655 TPD52L1Q16890 204 aaPredicted RBP22.67■■□□□ 1.22
MMP28-207ENST00000619655 KMT5BQ4FZB7 885 aa22.67■■□□□ 1.22
MMP28-207ENST00000619655 LTBP3Q9NS15 1303 aa22.67■■□□□ 1.22
MMP28-207ENST00000619655 AP3B2Q13367 1082 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 KIF4BQ2VIQ3 1234 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 SPATA1Q5VX52 437 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 NUDT12Q9BQG2 462 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 CUEDC2Q9H467 287 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 IMPACTQ9P2X3 320 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 PCDHA12Q9UN75 941 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 ATAD5Q96QE3 1844 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 PHF20L1A8MW92 1017 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 OPLAHO14841 1288 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 ARHGAP4P98171 946 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 GRB10Q13322 594 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 KRT79Q5XKE5 535 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 FCHSD1Q86WN1 690 aa22.66■■□□□ 1.22
MMP28-207ENST00000619655 DEFB129Q9H1M3 183 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms