RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.96□□□□□ -0.17
UPF3B-204ENST00000619445 CD4P01730 458 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 SMPD1P17405 629 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 CPT1AP50416 773 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 SNAP25P60880 206 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 ITGA7Q13683 1181 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 CWC27Q6UX04 472 aaKnown RBP13.96□□□□□ -0.17
UPF3B-204ENST00000619445 CXCL17Q6UXB2 119 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 RNF207Q6ZRF8 634 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 FBXO16Q8IX29 292 aaPredicted RBP13.96□□□□□ -0.17
UPF3B-204ENST00000619445 KRT23Q9C075 422 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 KAT14Q9H8E8 782 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 FRMPD2Q68DX3 1309 aaPredicted RBP13.96□□□□□ -0.17
UPF3B-204ENST00000619445 LCTP09848 1927 aa13.96□□□□□ -0.17
UPF3B-204ENST00000619445 RBM47A0AV96 593 aaKnown RBP13.96□□□□□ -0.18
UPF3B-204ENST00000619445 NFIBO00712 420 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 KPNA6O60684 536 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 SUPT20HL2P0C7V6 817 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 BEX3Q00994 111 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 PDE4DQ08499 809 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 ASPRV1Q53RT3 343 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 TBC1D10CQ8IV04 446 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 ANKS1AQ92625 1134 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 CDX2Q99626 313 aaPredicted RBP13.96□□□□□ -0.18
UPF3B-204ENST00000619445 WDR11Q9BZH6 1224 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 GPHNQ9NQX3 736 aaPredicted RBP13.96□□□□□ -0.18
UPF3B-204ENST00000619445 ASTN1O14525 1302 aa13.96□□□□□ -0.18
UPF3B-204ENST00000619445 MYO9BQ13459 2157 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 MYH6P13533 1939 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 ABCB11O95342 1321 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 EPHB4P54760 987 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 EEPD1Q7L9B9 569 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 RASGRP2Q7LDG7 609 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 MCF2L2Q86YR7 1114 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 PNMA1Q8ND90 353 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 SCFD2Q8WU76 684 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 FAM161BQ96MY7 647 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 ZSCAN10Q96SZ4 725 aaPredicted RBP13.95□□□□□ -0.18
UPF3B-204ENST00000619445 HIPK3Q9H422 1215 aa13.95□□□□□ -0.18
UPF3B-204ENST00000619445 NEDD4P46934 1319 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 KDM4AO75164 1064 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 EDNRBP24530 442 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 CALML3P27482 149 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 RPS6P62753 249 aaKnown RBP13.94□□□□□ -0.18
UPF3B-204ENST00000619445 TRAF1Q13077 416 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 PPP2R5BQ15173 497 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 TMEM240Q5SV17 173 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 RPUSD2Q8IZ73 545 aaKnown RBP13.94□□□□□ -0.18
UPF3B-204ENST00000619445 CLEC4DQ8WXI8 215 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 YTHDC1Q96MU7 727 aaKnown RBP13.94□□□□□ -0.18
UPF3B-204ENST00000619445 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.94□□□□□ -0.185e-7■□□□□ 11.1
UPF3B-204ENST00000619445 UBAC1Q9BSL1 405 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 IL23AQ9NPF7 189 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 PDGFCQ9NRA1 345 aa13.94□□□□□ -0.18
UPF3B-204ENST00000619445 IGHDP01880 384 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 PFKMP08237 780 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 CSF2RAP15509 400 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 DNAJB2P25686 324 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 IRX5P78411 483 aaPredicted RBP13.93□□□□□ -0.18
UPF3B-204ENST00000619445 TTLL4Q14679 1199 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 RASIP1Q5U651 963 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 SLC30A10Q6XR72 485 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.93□□□□□ -0.18
UPF3B-204ENST00000619445 MAFAQ8NHW3 353 aaPredicted RBP13.93□□□□□ -0.18
UPF3B-204ENST00000619445 RUFY2Q8WXA3 655 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 MTG1Q9BT17 334 aaPredicted RBP13.93□□□□□ -0.18
UPF3B-204ENST00000619445 PPP1R12CQ9BZL4 782 aa13.93□□□□□ -0.18
UPF3B-204ENST00000619445 PARP1P09874 1014 aaKnown RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 FOSL2P15408 326 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 PTPN11Q06124 597 aaPredicted RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 TRDNQ13061 729 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 RAB30Q15771 203 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 CDC37Q16543 378 aaPredicted RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 SAMD3Q8N6K7 520 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 OR6J1Q8NGC5 347 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 EXOC6Q8TAG9 804 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 HERVK_113Q902F9 699 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 TIFAQ96CG3 184 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 IWS1Q96ST2 819 aa13.92□□□□□ -0.18
UPF3B-204ENST00000619445 ALDH8A1Q9H2A2 487 aaPredicted RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 TTYH1Q9H313 450 aaPredicted RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 MRPL11Q9Y3B7 192 aaKnown RBP13.92□□□□□ -0.18
UPF3B-204ENST00000619445 SCN10AQ9Y5Y9 1956 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 TNKSO95271 1327 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 A6NJR5 290 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 B4E1Z4 1266 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 FGBP02675 491 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 CYP2C18P33260 490 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 PURAQ00577 322 aaKnown RBP13.91□□□□□ -0.18
UPF3B-204ENST00000619445 NFRKBQ6P4R8 1299 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 ZNF365Q70YC5 407 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 ENAHQ8N8S7 591 aaPredicted RBP13.91□□□□□ -0.18
UPF3B-204ENST00000619445 NSUN6Q8TEA1 469 aaKnown RBP13.91□□□□□ -0.18
UPF3B-204ENST00000619445 ZKSCAN3Q9BRR0 538 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 NOC4LQ9BVI4 516 aaKnown RBP13.91□□□□□ -0.18
UPF3B-204ENST00000619445 MAP3K20Q9NYL2 800 aaKnown RBP13.91□□□□□ -0.18
UPF3B-204ENST00000619445 ZSWIM5Q9P217 1185 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 MSRAQ9UJ68 235 aa13.91□□□□□ -0.18
UPF3B-204ENST00000619445 GRIN2DO15399 1336 aa13.9□□□□□ -0.18
UPF3B-204ENST00000619445 DHX16O60231 1041 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms