RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 KRT83P78385 493 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 SND1Q7KZF4 910 aaKnown RBP eCLIP15.67■□□□□ 0.14e-8■■■■■ 34.1
COL6A1-207ENST00000612273 CCDC47Q96A33 483 aaKnown RBP15.67■□□□□ 0.1
COL6A1-207ENST00000612273 IFIH1Q9BYX4 1025 aaKnown RBP15.67■□□□□ 0.1
COL6A1-207ENST00000612273 STXBP3O00186 592 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 TNNI2P48788 182 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 AMIGO3Q86WK7 504 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 NELFCDQ8IXH7 590 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 GIMAP8Q8ND71 665 aaPredicted RBP15.67■□□□□ 0.1
COL6A1-207ENST00000612273 SMARCC1Q92922 1105 aaPredicted RBP15.67■□□□□ 0.1
COL6A1-207ENST00000612273 GBP3Q9H0R5 595 aa15.67■□□□□ 0.1
COL6A1-207ENST00000612273 MYH6P13533 1939 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 CT47A1Q5JQC4 288 aaPredicted RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 SECISBP2LQ93073 1101 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 RRP36Q96EU6 259 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 NUDT12Q9BQG2 462 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 DMGDHQ9UI17 866 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 TDP2O95551 362 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 EEF1GP26641 437 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 EIF4A3P38919 411 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 NONOQ15233 471 aaKnown RBP eCLIP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 SF3B3Q15393 1217 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 HNRNPLLQ8WVV9 542 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 EYA3Q99504 573 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 DNAJC7Q99615 494 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 KBTBD4Q9NVX7 518 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 SEC63Q9UGP8 760 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 RRP15Q9Y3B9 282 aaKnown RBP15.66■□□□□ 0.1
COL6A1-207ENST00000612273 MYH13Q9UKX3 1938 aa15.66■□□□□ 0.1
COL6A1-207ENST00000612273 ESYT3A0FGR9 886 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 SRGNP10124 158 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 CCDC181Q5TID7 509 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 CACNA2D4Q7Z3S7 1137 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 KIAA0895Q8NCT3 520 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 GOLGA5Q8TBA6 731 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 MS4A14Q96JA4 679 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 LRRC1Q9BTT6 524 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 BARHL2Q9NY43 387 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 CWC15Q9P013 229 aaKnown RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 PDS5AQ29RF7 1337 aaKnown RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 USP17L5A8MUK1 530 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 RHOBTB3O94955 611 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 CCNE1P24864 410 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 RASSF7Q02833 373 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 UBE2SQ16763 222 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 PROCA1Q8NCQ7 364 aaPredicted RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 SEMA6BQ9H3T3 888 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 PACSIN2Q9UNF0 486 aaPredicted RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 CICQ96RK0 1608 aaPredicted RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 MYH3P11055 1940 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 FGRP09769 529 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 GFPT1Q06210 699 aaPredicted RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 PYM1Q9BRP8 204 aaKnown RBP15.65■□□□□ 0.1
COL6A1-207ENST00000612273 SELENOOQ9BVL4 669 aa15.65■□□□□ 0.1
COL6A1-207ENST00000612273 PLCD3Q8N3E9 789 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 CEP95Q96GE4 821 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 CALML4Q96GE6 196 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 THAP9Q9H5L6 903 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 CHD4Q14839 1912 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 PSMD14O00487 310 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 SLC16A2P36021 539 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 KCTD16Q68DU8 428 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 NEK8Q86SG6 692 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 DGKHQ86XP1 1220 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 ACBD3Q9H3P7 528 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 ARHGAP20Q9P2F6 1191 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 MYO1AQ9UBC5 1043 aa15.64■□□□□ 0.09
COL6A1-207ENST00000612273 MYMKA6NI61 221 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 LRRC53A6NM62 1247 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 RASA1P20936 1047 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 ZBED6P86452 979 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 GRM4Q14833 912 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 TEX11Q8IYF3 940 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.63■□□□□ 0.09
COL6A1-207ENST00000612273 SLC37A4O43826 429 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 SYF2O95926 243 aaKnown RBP15.63■□□□□ 0.09
COL6A1-207ENST00000612273 BTDP43251 543 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 MIIPQ5JXC2 388 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 KCNK18Q7Z418 384 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 AFAP1L1Q8TED9 768 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 IFT81Q8WYA0 676 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 ZSCAN5CA6NGD5 496 aaPredicted RBP15.63■□□□□ 0.09
COL6A1-207ENST00000612273 KIF11P52732 1056 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 TPTE2Q6XPS3 522 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 SV2BQ7L1I2 683 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 FAM71BQ8TC56 605 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 SNX29Q8TEQ0 813 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 NDST4Q9H3R1 872 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 C6orf50Q9HD87 102 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 SALL4Q9UJQ4 1053 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 HPCAL4Q9UM19 191 aa15.63■□□□□ 0.09
COL6A1-207ENST00000612273 FECHP22830 423 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 CDK8P49336 464 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 REXO1Q8N1G1 1221 aaKnown RBP15.62■□□□□ 0.09
COL6A1-207ENST00000612273 GOLPH3Q9H4A6 298 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 PCDHA13Q9Y5I0 950 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 DDX60Q8IY21 1712 aaKnown RBP15.62■□□□□ 0.09
COL6A1-207ENST00000612273 BAG3O95817 575 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 MAGEA1P43355 309 aa15.62■□□□□ 0.09
COL6A1-207ENST00000612273 GNAQP50148 359 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms