RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 DNM1LO00429 736 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 CFBP00751 764 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 ZNF865P0CJ78 1059 aaPredicted RBP22.4■■□□□ 1.18
UPF1-212ENST00000601689 TAL1P17542 331 aaPredicted RBP22.4■■□□□ 1.18
UPF1-212ENST00000601689 ALDH5A1P51649 535 aaPredicted RBP22.4■■□□□ 1.18
UPF1-212ENST00000601689 RCAN1P53805 252 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 PDE4DQ08499 809 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 RTN1Q16799 776 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 ANO1Q5XXA6 986 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 APOA5Q6Q788 366 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 Q6ZUG5 572 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 NOL8Q76FK4 1167 aaKnown RBP22.4■■□□□ 1.18
UPF1-212ENST00000601689 NR2E3Q9Y5X4 410 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 CYP46A1Q9Y6A2 500 aa22.4■■□□□ 1.18
UPF1-212ENST00000601689 KLF18A0A0U1RQI7 1052 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 RXRAP19793 462 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 RPS6KB1P23443 525 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 SLC30A10Q6XR72 485 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 NSUN6Q8TEA1 469 aaKnown RBP22.39■■□□□ 1.17
UPF1-212ENST00000601689 PIBF1Q8WXW3 757 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 VTA1Q9NP79 307 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 PDE4DIPQ5VU43 2346 aa22.39■■□□□ 1.17
UPF1-212ENST00000601689 GOLGA8AA7E2F4 631 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 GOLGA8BA8MQT2 603 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 CYTH3O43739 400 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 DUSP11O75319 330 aaKnown RBP22.38■■□□□ 1.17
UPF1-212ENST00000601689 CCDC144BQ3MJ40 725 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 RUFY3Q7L099 469 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 UBE2Q1Q7Z7E8 422 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 CUL5Q93034 780 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 FGD4Q96M96 766 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 TM6SF1Q9BZW5 370 aa22.38■■□□□ 1.17
UPF1-212ENST00000601689 EVI5O60447 810 aa22.37■■□□□ 1.17
UPF1-212ENST00000601689 METAP2P50579 478 aaKnown RBP eCLIP22.37■■□□□ 1.17
UPF1-212ENST00000601689 ARHGEF16Q5VV41 709 aa22.37■■□□□ 1.17
UPF1-212ENST00000601689 IQSEC1Q6DN90 963 aa22.37■■□□□ 1.17
UPF1-212ENST00000601689 BRF1Q92994 677 aa22.37■■□□□ 1.17
UPF1-212ENST00000601689 IWS1Q96ST2 819 aa22.37■■□□□ 1.17
UPF1-212ENST00000601689 GCOM1H8Y6P7 765 aaPredicted RBP22.36■■□□□ 1.17
UPF1-212ENST00000601689 POLR2MP0CAP2 368 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 TNFAIP2Q03169 654 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 GJC2Q5T442 439 aaPredicted RBP22.36■■□□□ 1.17
UPF1-212ENST00000601689 TMTC3Q6ZXV5 915 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 EEPD1Q7L9B9 569 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 RAB11FIP4Q86YS3 637 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 FBXL16Q8N461 479 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 CCDC82Q8N4S0 544 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 SRBD1Q8N5C6 995 aaKnown RBP22.36■■□□□ 1.17
UPF1-212ENST00000601689 RMDN3Q96TC7 470 aa22.36■■□□□ 1.17
UPF1-212ENST00000601689 SENP6Q9GZR1 1112 aaPredicted RBP22.36■■□□□ 1.17
UPF1-212ENST00000601689 MKI67P46013 3256 aaKnown RBP22.35■■□□□ 1.17
UPF1-212ENST00000601689 PLEKHA8P1O95397 391 aa22.35■■□□□ 1.17
UPF1-212ENST00000601689 ANAPC15P60006 121 aa22.35■■□□□ 1.17
UPF1-212ENST00000601689 SYTL5Q8TDW5 730 aaPredicted RBP22.35■■□□□ 1.17
UPF1-212ENST00000601689 MORC4Q8TE76 937 aa22.35■■□□□ 1.17
UPF1-212ENST00000601689 DIS3LQ8TF46 1054 aaKnown RBP22.35■■□□□ 1.17
UPF1-212ENST00000601689 AP5M1Q9H0R1 490 aa22.35■■□□□ 1.17
UPF1-212ENST00000601689 ZSWIM6Q9HCJ5 1215 aa22.35■■□□□ 1.17
UPF1-212ENST00000601689 ZEB2O60315 1214 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 CPA1P15085 419 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 AKAP17AQ02040 695 aaKnown RBP22.34■■□□□ 1.17
UPF1-212ENST00000601689 APOBRQ0VD83 1088 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 LRRC41Q15345 812 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 STXBP2Q15833 593 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 PRPF38BQ5VTL8 546 aaKnown RBP22.34■■□□□ 1.17
UPF1-212ENST00000601689 PCSK9Q8NBP7 692 aaKnown RBP22.34■■□□□ 1.17
UPF1-212ENST00000601689 PURBQ96QR8 312 aaKnown RBP22.34■■□□□ 1.17
UPF1-212ENST00000601689 BRPF3Q9ULD4 1205 aa22.34■■□□□ 1.17
UPF1-212ENST00000601689 PGK1P00558 417 aa22.33■■□□□ 1.17
UPF1-212ENST00000601689 C6orf222P0C671 652 aaPredicted RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 HSD17B4P51659 736 aa22.33■■□□□ 1.17
UPF1-212ENST00000601689 COL9A3Q14050 684 aaPredicted RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 FBXO16Q8IX29 292 aaPredicted RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 CMTR1Q8N1G2 835 aaKnown RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 SMARCC2Q8TAQ2 1214 aa22.33■■□□□ 1.17
UPF1-212ENST00000601689 TSEN34Q9BSV6 310 aaKnown RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 RBM27Q9P2N5 1060 aaKnown RBP22.33■■□□□ 1.17
UPF1-212ENST00000601689 LCTP09848 1927 aa22.33■■□□□ 1.16
UPF1-212ENST00000601689 PPP1R11O60927 126 aaPredicted RBP22.32■■□□□ 1.16
UPF1-212ENST00000601689 GHRHRQ02643 423 aa22.32■■□□□ 1.16
UPF1-212ENST00000601689 BRDTQ58F21 947 aaPredicted RBP22.32■■□□□ 1.16
UPF1-212ENST00000601689 TBC1D5Q92609 795 aa22.32■■□□□ 1.16
UPF1-212ENST00000601689 TAAR1Q96RJ0 339 aa22.32■■□□□ 1.16
UPF1-212ENST00000601689 PDRG1Q9NUG6 133 aa22.32■■□□□ 1.16
UPF1-212ENST00000601689 Q9Y3F1 56 aa22.32■■□□□ 1.16
UPF1-212ENST00000601689 MOXD2PA6NHM9 499 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 hCG_1984214I3L0E3 225 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 NKRFO15226 690 aaKnown RBP eCLIP22.31■■□□□ 1.16
UPF1-212ENST00000601689 ADCYAP1R1P41586 468 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 CPLX2Q6PUV4 134 aaKnown RBP22.31■■□□□ 1.16
UPF1-212ENST00000601689 ZNF713Q8N859 430 aaPredicted RBP22.31■■□□□ 1.16
UPF1-212ENST00000601689 SCFD2Q8WU76 684 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 AGXT2Q9BYV1 514 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 WDR11Q9BZH6 1224 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 KATNBL1Q9H079 304 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 ASTN1O14525 1302 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 SYNRGQ9UMZ2 1314 aa22.31■■□□□ 1.16
UPF1-212ENST00000601689 COL6A1P12109 1028 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 EIF2AK2P19525 551 aaKnown RBP22.3■■□□□ 1.16
UPF1-212ENST00000601689 EDNRBP24530 442 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms