RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 ZNFX1Q9P2E3 1918 aaKnown RBP16.67■□□□□ 0.26
USE1-210ENST00000601662 DEXIO95424 95 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 PDCP20941 246 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 TRAF1Q13077 416 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 MAP3K21Q5TCX8 1036 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 SPRYD3Q8NCJ5 442 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 CHST13Q8NET6 341 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 SHISA4Q96DD7 197 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 TRERF1Q96PN7 1200 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 SLC26A6Q9BXS9 759 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 VAT1LQ9HCJ6 419 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 PAK6Q9NQU5 681 aaPredicted RBP16.67■□□□□ 0.26
USE1-210ENST00000601662 ORC3Q9UBD5 711 aaPredicted RBP16.67■□□□□ 0.26
USE1-210ENST00000601662 SEC63Q9UGP8 760 aaKnown RBP16.67■□□□□ 0.26
USE1-210ENST00000601662 FBXO40Q9UH90 709 aa16.67■□□□□ 0.26
USE1-210ENST00000601662 GJB2P29033 226 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 PRAMEF19Q5SWL8 479 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 ADGRF4Q8IZF3 695 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 CMTR1Q8N1G2 835 aaKnown RBP16.66■□□□□ 0.26
USE1-210ENST00000601662 RGS22Q8NE09 1264 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 PHKBQ93100 1093 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 MAML3Q96JK9 1138 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 RANBP17Q9H2T7 1088 aaKnown RBP16.66■□□□□ 0.26
USE1-210ENST00000601662 ACAD9Q9H845 621 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 FOXD4L1Q9NU39 408 aa16.66■□□□□ 0.26
USE1-210ENST00000601662 JAK2O60674 1132 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 ICAM1P05362 532 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 XBP1P17861 261 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 ZNF792Q3KQV3 632 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 MUM1L1Q5H9M0 696 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 OLFML2BQ68BL8 750 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 FAM177A1Q8N128 213 aaPredicted RBP16.65■□□□□ 0.26
USE1-210ENST00000601662 JMJD4Q9H9V9 463 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 PNMA2Q9UL42 364 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 PDE4DIPQ5VU43 2346 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 CNTNAP5Q8WYK1 1306 aa16.65■□□□□ 0.26
USE1-210ENST00000601662 PNMA6FA0A0J9YX94 578 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 CYTH3O43739 400 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 FDPSP14324 419 aaKnown RBP16.64■□□□□ 0.25
USE1-210ENST00000601662 TKFCQ3LXA3 575 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 LARP1BQ659C4 914 aaKnown RBP16.64■□□□□ 0.25
USE1-210ENST00000601662 NSMFQ6X4W1 530 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 TRPV1Q8NER1 839 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 MTMR8Q96EF0 704 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 BRCA2P51587 3418 aa16.64■□□□□ 0.25
USE1-210ENST00000601662 POTEB2H3BUK9 544 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 hCG_1984214I3L0E3 225 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 ZBTB5O15062 677 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 FARP2O94887 1054 aaPredicted RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 CNTN2Q02246 1040 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 TRIM29Q14134 588 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 PFKFB3Q16875 520 aaPredicted RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 USH1GQ495M9 461 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 ANO1Q5XXA6 986 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 ZNF713Q8N859 430 aaPredicted RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 TINF2Q9BSI4 451 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 ALG1Q9BT22 464 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 A1CFQ9NQ94 594 aaKnown RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 DIS3Q9Y2L1 958 aaKnown RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 RBBP6Q7Z6E9 1792 aaKnown RBP16.63■□□□□ 0.25
USE1-210ENST00000601662 SMCHD1A6NHR9 2005 aa16.63■□□□□ 0.25
USE1-210ENST00000601662 DNAJC25-GNG10A0A024R161 153 aa16.62■□□□□ 0.25
USE1-210ENST00000601662 SCG2P13521 617 aa16.62■□□□□ 0.25
USE1-210ENST00000601662 CDC37Q16543 378 aaPredicted RBP16.62■□□□□ 0.25
USE1-210ENST00000601662 CCDC12Q8WUD4 166 aaPredicted RBP16.62■□□□□ 0.25
USE1-210ENST00000601662 PIGSQ96S52 555 aa16.62■□□□□ 0.25
USE1-210ENST00000601662 CRISPLD2Q9H0B8 497 aa16.62■□□□□ 0.25
USE1-210ENST00000601662 SH3GLB2Q9NR46 395 aa16.62■□□□□ 0.25
USE1-210ENST00000601662 CIZ1Q9ULV3 898 aaPredicted RBP16.62■□□□□ 0.25
USE1-210ENST00000601662 ZNF236Q9UL36 1845 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 IGHA2P01877 340 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 CYBAP13498 195 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 PKN1Q16512 942 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 SLC35G1Q2M3R5 365 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 HOMER1Q86YM7 354 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 PAWRQ96IZ0 340 aaKnown RBP16.61■□□□□ 0.25
USE1-210ENST00000601662 C8orf76Q96K31 380 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 AMNQ9BXJ7 453 aa16.61■□□□□ 0.25
USE1-210ENST00000601662 DDX20Q9UHI6 824 aaKnown RBP16.61■□□□□ 0.25
USE1-210ENST00000601662 H3BQV1 296 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 NFIBO00712 420 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 PPFIA3O75145 1194 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 MYCNP04198 464 aaPredicted RBP16.6■□□□□ 0.25
USE1-210ENST00000601662 BAATQ14032 418 aaPredicted RBP16.6■□□□□ 0.25
USE1-210ENST00000601662 QRICH1Q2TAL8 776 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 LHX8Q68G74 356 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
USE1-210ENST00000601662 FBXO11Q86XK2 927 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 DIS3LQ8TF46 1054 aaKnown RBP16.6■□□□□ 0.25
USE1-210ENST00000601662 PIBF1Q8WXW3 757 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 PURBQ96QR8 312 aaKnown RBP16.6■□□□□ 0.25
USE1-210ENST00000601662 CNPY2Q9Y2B0 182 aa16.6■□□□□ 0.25
USE1-210ENST00000601662 PLXNA1Q9UIW2 1896 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 hCG_1642624A0A1W2PR95 340 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 SOWAHBA6NEL2 793 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 SNAI1O95863 264 aaPredicted RBP16.59■□□□□ 0.25
USE1-210ENST00000601662 CALML3P27482 149 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 NUCB2P80303 420 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 GALNT17Q6IS24 598 aa16.59■□□□□ 0.25
USE1-210ENST00000601662 HEATR3Q7Z4Q2 680 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms