RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MAML3Q96JK9 1138 aa22.32■■□□□ 1.16
UPF1-209ENST00000600310 SH2B1Q9NRF2 756 aaPredicted RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 MAP3K20Q9NYL2 800 aaKnown RBP22.32■■□□□ 1.16
UPF1-209ENST00000600310 CD2BP2O95400 341 aaKnown RBP22.31■■□□□ 1.16
UPF1-209ENST00000600310 CTDNEP1O95476 244 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 IGHA2P01877 340 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 SCG2P13521 617 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 CNTN2Q02246 1040 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 ST3GAL1Q11201 340 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 SLC9C1Q4G0N8 1177 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 WWC2Q6AWC2 1192 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 SLC30A10Q6XR72 485 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 ZNF467Q7Z7K2 595 aaPredicted RBP22.31■■□□□ 1.16
UPF1-209ENST00000600310 GPKOWQ92917 476 aaPredicted RBP eCLIP22.31■■□□□ 1.16
UPF1-209ENST00000600310 FGD4Q96M96 766 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 FLRT1Q9NZU1 646 aa22.31■■□□□ 1.16
UPF1-209ENST00000600310 PPFIA3O75145 1194 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 CALML3P27482 149 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 HSD17B4P51659 736 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 SYTL5Q8TDW5 730 aaPredicted RBP22.3■■□□□ 1.16
UPF1-209ENST00000600310 SH3TC2Q8TF17 1288 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 ARMC5Q96C12 935 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 BARHL2Q9NY43 387 aa22.3■■□□□ 1.16
UPF1-209ENST00000600310 SOWAHBA6NEL2 793 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 STXBP3O00186 592 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 DEXIO95424 95 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 CFBP00751 764 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 HMGCRP04035 888 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 TYW1BQ6NUM6 668 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 PPP1R18Q6NYC8 613 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 MSL3Q8N5Y2 521 aaKnown RBP22.29■■□□□ 1.16
UPF1-209ENST00000600310 STK36Q9NRP7 1315 aa22.29■■□□□ 1.16
UPF1-209ENST00000600310 MYH6P13533 1939 aa22.28■■□□□ 1.16
UPF1-209ENST00000600310 GCOM1H8Y6P7 765 aaPredicted RBP22.28■■□□□ 1.16
UPF1-209ENST00000600310 POLR2MP0CAP2 368 aa22.28■■□□□ 1.16
UPF1-209ENST00000600310 MLLT1Q03111 559 aaPredicted RBP22.28■■□□□ 1.16
UPF1-209ENST00000600310 MFSD14CQ5VZR4 134 aa22.28■■□□□ 1.16
UPF1-209ENST00000600310 MAMDC4Q6UXC1 1216 aa22.28■■□□□ 1.16
UPF1-209ENST00000600310 NSUN7Q8NE18 718 aaKnown RBP22.28■■□□□ 1.16
UPF1-209ENST00000600310 PURBQ96QR8 312 aaKnown RBP22.28■■□□□ 1.16
UPF1-209ENST00000600310 COL20A1Q9P218 1284 aa22.28■■□□□ 1.16
UPF1-209ENST00000600310 ADD3Q9UEY8 706 aaKnown RBP22.28■■□□□ 1.16
UPF1-209ENST00000600310 INHAP05111 366 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 NAPAP54920 295 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 CCDC83Q8IWF9 413 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 TMX3Q96JJ7 454 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 TINF2Q9BSI4 451 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 PSTPIP2Q9H939 334 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 BIN2Q9UBW5 565 aaPredicted RBP22.27■■□□□ 1.16
UPF1-209ENST00000600310 ZNFX1Q9P2E3 1918 aaKnown RBP22.27■■□□□ 1.16
UPF1-209ENST00000600310 ASTN1O14525 1302 aa22.27■■□□□ 1.16
UPF1-209ENST00000600310 LOC102724159A0A0B4J2E5 919 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 PIK3CDO00329 1044 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 CYP2C19P33261 490 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 UBXN2AP68543 259 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 TRIM32Q13049 653 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 PWP2Q15269 919 aaKnown RBP22.26■■□□□ 1.15
UPF1-209ENST00000600310 MAP3K21Q5TCX8 1036 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 TEX2Q8IWB9 1127 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 DNERQ8NFT8 737 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 ZNF333Q96JL9 665 aa22.26■■□□□ 1.15
UPF1-209ENST00000600310 LLPHQ9BRT6 129 aaKnown RBP22.26■■□□□ 1.15
UPF1-209ENST00000600310 ORC3Q9UBD5 711 aaPredicted RBP22.26■■□□□ 1.15
UPF1-209ENST00000600310 ESYT2A0FGR8 921 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 MEIS2O14770 477 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 HOXA13P31271 388 aaPredicted RBP22.25■■□□□ 1.15
UPF1-209ENST00000600310 ALDH5A1P51649 535 aaPredicted RBP22.25■■□□□ 1.15
UPF1-209ENST00000600310 CCDC12Q8WUD4 166 aaPredicted RBP22.25■■□□□ 1.15
UPF1-209ENST00000600310 CUL5Q93034 780 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 TAAR1Q96RJ0 339 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 SH3GLB2Q9NR46 395 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 SYNGAP1Q96PV0 1343 aa22.25■■□□□ 1.15
UPF1-209ENST00000600310 SMCO2A6NFE2 343 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 ASB14A6NK59 587 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 FDPSP14324 419 aaKnown RBP22.24■■□□□ 1.15
UPF1-209ENST00000600310 MRPL12P52815 198 aaKnown RBP22.24■■□□□ 1.15
UPF1-209ENST00000600310 CACNB2Q08289 660 aaPredicted RBP22.24■■□□□ 1.15
UPF1-209ENST00000600310 MORC4Q8TE76 937 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 ZMYND12Q9H0C1 365 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 GLT8D2Q9H1C3 349 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 RIC8AQ9NPQ8 531 aa22.24■■□□□ 1.15
UPF1-209ENST00000600310 JAK2O60674 1132 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 DTNBO60941 627 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 SNAI1O95863 264 aaPredicted RBP22.23■■□□□ 1.15
UPF1-209ENST00000600310 PRKAR2AP13861 404 aaKnown RBP22.23■■□□□ 1.15
UPF1-209ENST00000600310 ADCY7P51828 1080 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 USP17L6PQ6QN14 398 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 ARMCX2Q7L311 632 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 FAM177A1Q8N128 213 aaPredicted RBP22.23■■□□□ 1.15
UPF1-209ENST00000600310 CCDC148Q8NFR7 591 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 SMARCC2Q8TAQ2 1214 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 NSUN6Q8TEA1 469 aaKnown RBP22.23■■□□□ 1.15
UPF1-209ENST00000600310 WASF1Q92558 559 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 SHISA4Q96DD7 197 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 RMDN3Q96TC7 470 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.23■■□□□ 1.15
UPF1-209ENST00000600310 VPS54Q9P1Q0 977 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 NRBP1Q9UHY1 535 aa22.23■■□□□ 1.15
UPF1-209ENST00000600310 EDNRBP24530 442 aa22.22■■□□□ 1.15
UPF1-209ENST00000600310 FCHSD1Q86WN1 690 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms