RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CCSAPQ6IQ19 270 aaPredicted RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 PCSK9Q8NBP7 692 aaKnown RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 NEDD1Q8NHV4 660 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 MAFAQ8NHW3 353 aaPredicted RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 COL25A1Q9BXS0 654 aaPredicted RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 AGXT2Q9BYV1 514 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 TTYH1Q9H313 450 aaPredicted RBP14.75□□□□□ -0.05
UPF1-208ENST00000600012 TPCN1Q9ULQ1 816 aa14.75□□□□□ -0.05
UPF1-208ENST00000600012 MYADML2A6NDP7 307 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 IFIT3O14879 490 aaKnown RBP14.74□□□□□ -0.05
UPF1-208ENST00000600012 C6orf222P0C671 652 aaPredicted RBP14.74□□□□□ -0.05
UPF1-208ENST00000600012 BMP3P12645 472 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 ME3Q16798 604 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 CCDC144BQ3MJ40 725 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 TMEM67Q5HYA8 995 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 SLFN13Q68D06 897 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 ARMCX2Q7L311 632 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 MYLIPQ8WY64 445 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 FGD4Q96M96 766 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 UPF3AQ9H1J1 476 aaKnown RBP14.74□□□□□ -0.05
UPF1-208ENST00000600012 SENP2Q9HC62 589 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 UNC80Q8N2C7 3258 aa14.74□□□□□ -0.05
UPF1-208ENST00000600012 TNKSO95271 1327 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 TSPY2A6NKD2 308 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 TIMP1P01033 207 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 ASGR1P07306 291 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 HSP90AA1P07900 732 aaKnown RBP14.73□□□□□ -0.05
UPF1-208ENST00000600012 STAT2P52630 851 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 GJA9P57773 515 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 ST3GAL1Q11201 340 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 STK3Q13188 491 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 PPP4R3BQ5MIZ7 849 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 FAM160B2Q86V87 743 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 TMEM87BQ96K49 555 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 ACAD9Q9H845 621 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 LY9Q9HBG7 655 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 TBX21Q9UL17 535 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 ISY1Q9ULR0 285 aaKnown RBP14.73□□□□□ -0.05
UPF1-208ENST00000600012 NAP1L2Q9ULW6 460 aaPredicted RBP14.73□□□□□ -0.05
UPF1-208ENST00000600012 MYO9BQ13459 2157 aa14.73□□□□□ -0.05
UPF1-208ENST00000600012 MYH6P13533 1939 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 A0A0U1RQG5 324 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 KLF18A0A0U1RQI7 1052 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 TMEM232C9JQI7 657 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 ADCY6O43306 1168 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 FOSL2P15408 326 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CDK7P50613 346 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 TFAP4Q01664 338 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CUL4AQ13619 759 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 GNASQ5JWF2 1037 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CCDC174Q6PII3 467 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 RAB11FIP4Q86YS3 637 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CCDC83Q8IWF9 413 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CCDC144CPQ8IYA2 1237 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 FBXL16Q8N461 479 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 NECAB1Q8N987 351 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 IGDCC4Q8TDY8 1250 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 CHURC1Q8WUH1 139 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 GMCL1Q96IK5 515 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 ZSCAN31Q96LW9 406 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 UBAC1Q9BSL1 405 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 SLKQ9H2G2 1235 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 SH2B1Q9NRF2 756 aaPredicted RBP14.72□□□□□ -0.05
UPF1-208ENST00000600012 HOMER2Q9NSB8 354 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 BRPF3Q9ULD4 1205 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 LRRC37A2A6NM11 1700 aa14.72□□□□□ -0.05
UPF1-208ENST00000600012 ERICH2A1L162 156 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 ARVCFO00192 962 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 NMT2O60551 498 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 SLC1A4P43007 532 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 NKX3-2P78367 333 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 IRX5P78411 483 aaPredicted RBP14.71□□□□□ -0.05
UPF1-208ENST00000600012 IKQ13123 557 aaPredicted RBP14.71□□□□□ -0.05
UPF1-208ENST00000600012 PPIGQ13427 754 aaKnown RBP eCLIP14.71□□□□□ -0.052e-7■■□□□ 11.8
UPF1-208ENST00000600012 WTAPQ15007 396 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 SART3Q15020 963 aaKnown RBP14.71□□□□□ -0.05
UPF1-208ENST00000600012 TKFCQ3LXA3 575 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 MFSD5Q6N075 450 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 FAM133AQ8N9E0 248 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 VTI1AQ96AJ9 217 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 ZSCAN10Q96SZ4 725 aaPredicted RBP14.71□□□□□ -0.05
UPF1-208ENST00000600012 KATNBL1Q9H079 304 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 A1CFQ9NQ94 594 aaKnown RBP14.71□□□□□ -0.05
UPF1-208ENST00000600012 RNF146Q9NTX7 359 aa14.71□□□□□ -0.05
UPF1-208ENST00000600012 ASB14A6NK59 587 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 GOLGA8BA8MQT2 603 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 TLR3O15455 904 aaKnown RBP14.7□□□□□ -0.06
UPF1-208ENST00000600012 PLA2G6O60733 806 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 DTNBO60941 627 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 DNAJB2P25686 324 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 CNTN2Q02246 1040 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 SEC23AQ15436 765 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 NFXL1Q6ZNB6 911 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 IQCA1Q86XH1 822 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 ENAHQ8N8S7 591 aaPredicted RBP14.7□□□□□ -0.06
UPF1-208ENST00000600012 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.7□□□□□ -0.061e-6■■□□□ 13.6
UPF1-208ENST00000600012 MTA3Q9BTC8 594 aa14.7□□□□□ -0.06
UPF1-208ENST00000600012 ZNF536O15090 1300 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms