RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TICAM2Q86XR7 235 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 EVI5LQ96CN4 794 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 WNT8AQ9H1J5 351 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 RWDD1Q9H446 243 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-212ENST00000597995 HELLSQ9NRZ9 838 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 TCP11L1Q9NUJ3 509 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 POLR3EQ9NVU0 708 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 DDX49Q9Y6V7 483 aaKnown RBP14.76□□□□□ -0.05
TRIM28-212ENST00000597995 CHD9Q3L8U1 2897 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 RBM47A0AV96 593 aaKnown RBP14.75□□□□□ -0.05
TRIM28-212ENST00000597995 TNFRSF10AO00220 468 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 PFKMP08237 780 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 TOP1P11387 765 aaKnown RBP14.75□□□□□ -0.05
TRIM28-212ENST00000597995 PTGS1P23219 599 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 ALDH5A1P51649 535 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-212ENST00000597995 PSMC6P62333 389 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 ADGRE1Q14246 886 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 TMEM63BQ5T3F8 832 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 SYDE2Q5VT97 1194 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 TTBK2Q6IQ55 1244 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 OTOP2Q7RTS6 562 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 PURBQ96QR8 312 aaKnown RBP14.75□□□□□ -0.05
TRIM28-212ENST00000597995 WDR11Q9BZH6 1224 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 ALDH8A1Q9H2A2 487 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-212ENST00000597995 NKX2-4Q9H2Z4 354 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 SLC4A7Q9Y6M7 1214 aa14.75□□□□□ -0.05
TRIM28-212ENST00000597995 SLC16A2P36021 539 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 CPT1AP50416 773 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 VPS53Q5VIR6 699 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 RASGRP2Q7LDG7 609 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 PPM1EQ8WY54 764 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 ASB2Q96Q27 587 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 THEGQ9P2T0 379 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 ZBTB47Q9UFB7 747 aaPredicted RBP14.74□□□□□ -0.05
TRIM28-212ENST00000597995 MTMR7Q9Y216 660 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 YBX2Q9Y2T7 364 aaKnown RBP14.74□□□□□ -0.05
TRIM28-212ENST00000597995 PCDHA11Q9Y5I1 949 aa14.74□□□□□ -0.05
TRIM28-212ENST00000597995 LCTP09848 1927 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 NFIBO00712 420 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 NKRFO15226 690 aaKnown RBP eCLIP14.73□□□□□ -0.05
TRIM28-212ENST00000597995 FGAP02671 866 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 PURAQ00577 322 aaKnown RBP14.73□□□□□ -0.05
TRIM28-212ENST00000597995 NUCB1Q02818 461 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 BRDTQ58F21 947 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-212ENST00000597995 CHD1LQ86WJ1 897 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 PLEKHM2Q8IWE5 1019 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 CLEC4DQ8WXI8 215 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 VWCEQ96DN2 955 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 TTC14Q96N46 770 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 MPHOSPH6Q99547 160 aaKnown RBP14.73□□□□□ -0.05
TRIM28-212ENST00000597995 TMEM47Q9BQJ4 181 aa14.73□□□□□ -0.05
TRIM28-212ENST00000597995 MTG1Q9BT17 334 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-212ENST00000597995 TNKSO95271 1327 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 MUC3AQ02505 3323 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 PTPDC1A2A3K4 754 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 KPNA6O60684 536 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 PCP11498 1178 aaKnown RBP14.72□□□□□ -0.05
TRIM28-212ENST00000597995 IGFBP4P22692 258 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 MRPS5P82675 430 aaKnown RBP14.72□□□□□ -0.05
TRIM28-212ENST00000597995 MCMDC2Q4G0Z9 681 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 RNF207Q6ZRF8 634 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 DNERQ8NFT8 737 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 SCLYQ96I15 445 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 FAM227BQ96M60 508 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 GPCPD1Q9NPB8 672 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 GPHNQ9NQX3 736 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-212ENST00000597995 TOMM22Q9NS69 142 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 TRMT13Q9NUP7 481 aaKnown RBP14.72□□□□□ -0.05
TRIM28-212ENST00000597995 CHD7Q9P2D1 2997 aa14.72□□□□□ -0.05
TRIM28-212ENST00000597995 ZMYM6O95789 1325 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 WDR19Q8NEZ3 1342 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 RAD50Q92878 1312 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 A0A0D9SFI3 127 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 B4DLN1 442 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 MYL3P08590 195 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 PDHBP11177 359 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 CYP2C9P11712 490 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 ATP2A2P16615 1042 aaKnown RBP14.71□□□□□ -0.05
TRIM28-212ENST00000597995 EDNRBP24530 442 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 CALML3P27482 149 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 MRPL12P52815 198 aaKnown RBP14.71□□□□□ -0.05
TRIM28-212ENST00000597995 IRX6P78412 446 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-212ENST00000597995 CCDC85BQ15834 202 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-212ENST00000597995 NFRKBQ6P4R8 1299 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 OR6J1Q8NGC5 347 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 SCFD2Q8WU76 684 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 MAF1Q9H063 256 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 OSBPL3Q9H4L5 887 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 GBF1Q92538 1859 aa14.71□□□□□ -0.05
TRIM28-212ENST00000597995 FRMPD2Q68DX3 1309 aaPredicted RBP14.7□□□□□ -0.06
TRIM28-212ENST00000597995 NCOR1O75376 2440 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 A6NJR5 290 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 ZBBXA8MT70 800 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 SNHG28P0DPA3 235 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 HSPD1P10809 573 aaKnown RBP14.7□□□□□ -0.06
TRIM28-212ENST00000597995 ACTN1P12814 892 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 RFC2P35250 354 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 RABGGTBP53611 331 aa14.7□□□□□ -0.06
TRIM28-212ENST00000597995 RPS6P62753 249 aaKnown RBP14.7□□□□□ -0.06
TRIM28-212ENST00000597995 PTPN11Q06124 597 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms