RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 PURBQ96QR8 312 aaKnown RBP16.58■□□□□ 0.24
LIG1-208ENST00000595758 RNF208Q9H0X6 261 aa16.58■□□□□ 0.24
LIG1-208ENST00000595758 UNC93B1Q9H1C4 597 aa16.58■□□□□ 0.24
LIG1-208ENST00000595758 RPTORQ8N122 1335 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 OPLAHO14841 1288 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 PRPF3O43395 683 aaKnown RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 CFBP00751 764 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 AKAP17AQ02040 695 aaKnown RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 CPLX2Q6PUV4 134 aaKnown RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 MAMDC4Q6UXC1 1216 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 HEATR3Q7Z4Q2 680 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 SAMD3Q8N6K7 520 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 SYTL5Q8TDW5 730 aaPredicted RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 PHKBQ93100 1093 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 TMEM106CQ9BVX2 250 aa16.57■□□□□ 0.24
LIG1-208ENST00000595758 HMX1Q9NP08 348 aaPredicted RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 RBM27Q9P2N5 1060 aaKnown RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 ADD3Q9UEY8 706 aaKnown RBP16.57■□□□□ 0.24
LIG1-208ENST00000595758 SYNGAP1Q96PV0 1343 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 ASB14A6NK59 587 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 GCOM1H8Y6P7 765 aaPredicted RBP16.56■□□□□ 0.24
LIG1-208ENST00000595758 POLR2MP0CAP2 368 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 SCRN1Q12765 414 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 GPKOWQ92917 476 aaPredicted RBP eCLIP16.56■□□□□ 0.24
LIG1-208ENST00000595758 SLC26A6Q9BXS9 759 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.56■□□□□ 0.24
LIG1-208ENST00000595758 MAP3K20Q9NYL2 800 aaKnown RBP16.56■□□□□ 0.24
LIG1-208ENST00000595758 LIMCH1Q9UPQ0 1083 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 CNPY2Q9Y2B0 182 aa16.56■□□□□ 0.24
LIG1-208ENST00000595758 PLXNA1Q9UIW2 1896 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 ASTN1O14525 1302 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 PPFIA3O75145 1194 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 SCG2P13521 617 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 HSD17B4P51659 736 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 GHRHRQ02643 423 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 ME3Q16798 604 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 PFKFB3Q16875 520 aaPredicted RBP16.55■□□□□ 0.24
LIG1-208ENST00000595758 PRAMEF19Q5SWL8 479 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 WWC2Q6AWC2 1192 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 ARMCX2Q7L311 632 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 TRIM22Q8IYM9 498 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 NECAB1Q8N987 351 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 TRPV1Q8NER1 839 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 IL27Q8NEV9 243 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 RNF26Q9BY78 433 aaPredicted RBP16.55■□□□□ 0.24
LIG1-208ENST00000595758 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.55■□□□□ 0.24
LIG1-208ENST00000595758 NRBP1Q9UHY1 535 aa16.55■□□□□ 0.24
LIG1-208ENST00000595758 LOC102724159A0A0B4J2E5 919 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 B4DLN1 442 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 hCG_1984214I3L0E3 225 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 ST18O60284 1047 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 CDKL5O76039 1030 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 SNAI1O95863 264 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 GJB1P08034 283 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 CYBAP13498 195 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 CNGA1P29973 690 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 CCND3P30281 292 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 HOXA13P31271 388 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 ALDH5A1P51649 535 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 MRPL12P52815 198 aaKnown RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 SSRP1Q08945 709 aaKnown RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 PWP2Q15269 919 aaKnown RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 ZNF713Q8N859 430 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 DNERQ8NFT8 737 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 CUL5Q93034 780 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 TAAR1Q96RJ0 339 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 MPHOSPH6Q99547 160 aaKnown RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 PSTPIP2Q9H939 334 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 PAK6Q9NQU5 681 aaPredicted RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 BARHL2Q9NY43 387 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 COL20A1Q9P218 1284 aa16.54■□□□□ 0.24
LIG1-208ENST00000595758 KIAA0100Q14667 2235 aaKnown RBP16.54■□□□□ 0.24
LIG1-208ENST00000595758 STXBP3O00186 592 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 LARGE1O95461 756 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 NAPAP54920 295 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 SOX10P56693 466 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 PKN1Q16512 942 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 PPP1R18Q6NYC8 613 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 NSUN6Q8TEA1 469 aaKnown RBP16.53■□□□□ 0.24
LIG1-208ENST00000595758 GTF3C6Q969F1 213 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 ZSCAN31Q96LW9 406 aaPredicted RBP16.53■□□□□ 0.24
LIG1-208ENST00000595758 DEFB118Q96PH6 123 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 RMDN3Q96TC7 470 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 ABHD16BQ9H3Z7 469 aa16.53■□□□□ 0.24
LIG1-208ENST00000595758 DDX49Q9Y6V7 483 aaKnown RBP16.53■□□□□ 0.24
LIG1-208ENST00000595758 PIK3CDO00329 1044 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 CAPN15O75808 1086 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 ACVR2BQ13705 512 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 ARHGEF16Q5VV41 709 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 TYW1BQ6NUM6 668 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 USP17L6PQ6QN14 398 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 FCHSD1Q86WN1 690 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 SMARCC2Q8TAQ2 1214 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 MORC4Q8TE76 937 aa16.52■□□□□ 0.24
LIG1-208ENST00000595758 ZHX1Q9UKY1 873 aaPredicted RBP16.52■□□□□ 0.24
LIG1-208ENST00000595758 POTEFA5A3E0 1075 aa16.51■□□□□ 0.23
LIG1-208ENST00000595758 MEIS2O14770 477 aa16.51■□□□□ 0.23
LIG1-208ENST00000595758 SEPT4O43236 478 aa16.51■□□□□ 0.23
LIG1-208ENST00000595758 DEXIO95424 95 aa16.51■□□□□ 0.23
LIG1-208ENST00000595758 SGPL1O95470 568 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms