RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 B4E1Z4 1266 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 NPHP4O75161 1426 aaPredicted RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 HNRNPCP07910 306 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIG1-207ENST00000594759 STX2P32856 288 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 SKOR1P84550 965 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 DHX9Q08211 1270 aaKnown RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 ANKRD20A8PQ5CZ79 823 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 TRAPPC11Q7Z392 1133 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 METTL16Q86W50 562 aaKnown RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 ECT2Q9H8V3 914 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 DLGAP2Q9P1A6 1054 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 DMGDHQ9UI17 866 aaKnown RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 PSMD14O00487 310 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 AHCYL1O43865 530 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 PRPF6O94906 941 aaKnown RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 RESP18Q5W5W9 173 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 PLIN2Q99541 437 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 TAF1DQ9H5J8 278 aaPredicted RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 ATP8A1Q9Y2Q0 1164 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 SHC4Q6S5L8 630 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 BZW1Q7L1Q6 419 aaKnown RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 TRIM74Q86UV6 250 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 TRIM73Q86UV7 250 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 CTNNBL1Q8WYA6 563 aaPredicted RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 CCDC77Q9BR77 488 aa13.5□□□□□ -0.25
LIG1-207ENST00000594759 TEX13AQ9BXU3 409 aaPredicted RBP13.5□□□□□ -0.25
LIG1-207ENST00000594759 ATP5DP30049 168 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 COG7P83436 770 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 SLC9C1Q4G0N8 1177 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 NFRKBQ6P4R8 1299 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 SDCCAG8Q86SQ7 713 aaPredicted RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 ZC3H18Q86VM9 953 aaKnown RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 FAXDC2Q96IV6 333 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 KRIT1O00522 736 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 SHOX2O60902 331 aaPredicted RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 RASSF7Q02833 373 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 METTL22Q9BUU2 404 aaPredicted RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 GGT7Q9UJ14 662 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 DBNLQ9UJU6 430 aaKnown RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 CASP1P29466 404 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 ASIC1P78348 528 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 ROR2Q01974 943 aaKnown RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 GCKRQ14397 625 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 TTLL7Q6ZT98 887 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 HAUS1Q96CS2 278 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 BABAM1Q9NWV8 329 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 IQGAP1P46940 1657 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 KRT18P05783 430 aaKnown RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 HOXB7P09629 217 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 PDE6CP51160 858 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 AMPD3Q01432 767 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIG1-207ENST00000594759 NAP1L3Q99457 506 aaPredicted RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 PAIP2BQ9ULR5 123 aaKnown RBP13.49□□□□□ -0.25
LIG1-207ENST00000594759 SNX12Q9UMY4 172 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 PCDH11XQ9BZA7 1347 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 PCDH11YQ9BZA8 1340 aa13.49□□□□□ -0.25
LIG1-207ENST00000594759 SEMA3EO15041 775 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 DNAJC8O75937 253 aaPredicted RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 PARP1P09874 1014 aaKnown RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 WTAPQ15007 396 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 SLC4A8Q2Y0W8 1093 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 DZIP3Q86Y13 1208 aaKnown RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 RUBCNQ92622 972 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 NAF1Q96HR8 494 aaKnown RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 BMP2KQ9NSY1 1161 aaPredicted RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 TCP11L1Q9NUJ3 509 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 CDK12Q9NYV4 1490 aaPredicted RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 CLTCQ00610 1675 aaKnown RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 TTC26A0AVF1 554 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 CARSP49589 748 aaKnown RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 PHLDB2Q86SQ0 1253 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 FBXO41Q8TF61 875 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 OPLAHO14841 1288 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 COL9A3Q14050 684 aaPredicted RBP13.48□□□□□ -0.25
LIG1-207ENST00000594759 ACCSLQ4AC99 568 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 TCERG1LQ5VWI1 586 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 NUGGCQ68CJ6 796 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 ZKSCAN3Q9BRR0 538 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 ETNK1Q9HBU6 452 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 INTUQ9ULD6 942 aa13.48□□□□□ -0.25
LIG1-207ENST00000594759 ZNF335Q9H4Z2 1342 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 KIF28PB7ZC32 967 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 PTPROQ16827 1216 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-207ENST00000594759 TRPM8Q7Z2W7 1104 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 TXLNGQ9NUQ3 528 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 ADD3Q9UEY8 706 aaKnown RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 B4DLN1 442 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 TXNDC9O14530 226 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CTDNEP1O95476 244 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 GYPCP04921 128 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CHGBP05060 677 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 RAPGEF1Q13905 1077 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 STOX1Q6ZVD7 989 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 MMGT1Q8N4V1 131 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 EZH1Q92800 747 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 RAB17Q9H0T7 212 aa13.47□□□□□ -0.25
LIG1-207ENST00000594759 CORO1CQ9ULV4 474 aaPredicted RBP13.47□□□□□ -0.25
LIG1-207ENST00000594759 SETBP1Q9Y6X0 1596 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms