RNA–Protein interactions for RNA: ENST00000589577.1

VPS25-204, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 5

Gene VPS25, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-204ENST00000589577 FAM83BQ5T0W9 1011 aa7.4□□□□□ -1.22
VPS25-204ENST00000589577 GORABQ5T7V8 394 aa7.4□□□□□ -1.22
VPS25-204ENST00000589577 TAPT1Q6NXT6 567 aa7.4□□□□□ -1.22
VPS25-204ENST00000589577 NOL8Q76FK4 1167 aaKnown RBP7.4□□□□□ -1.22
VPS25-204ENST00000589577 SP7Q8TDD2 431 aaPredicted RBP7.4□□□□□ -1.22
VPS25-204ENST00000589577 RIOK1Q9BRS2 568 aaKnown RBP7.4□□□□□ -1.22
VPS25-204ENST00000589577 IRF2BPLQ9H1B7 796 aa7.4□□□□□ -1.22
VPS25-204ENST00000589577 ARHGEF10LQ9HCE6 1279 aa7.4□□□□□ -1.22
VPS25-204ENST00000589577 ANKRD11Q6UB99 2663 aaPredicted RBP7.4□□□□□ -1.23
VPS25-204ENST00000589577 LOC730098B7Z3J9 87 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 H3BNC9 293 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 ATP2A1O14983 1001 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 GALR2O43603 387 aaPredicted RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 NBNO60934 754 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 SIGLEC14Q08ET2 396 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 HYAL1Q12794 435 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 SMAD4Q13485 552 aaKnown RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 CBX2Q14781 532 aaPredicted RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 NBPF20Q3BBV1 942 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 EPC2Q52LR7 807 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 FAM117BQ6P1L5 589 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 FRMD5Q7Z6J6 570 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 ADSSL1Q8N142 457 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 FAM133AQ8N9E0 248 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 DYNLL2Q96FJ2 89 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 NUP88Q99567 741 aaPredicted RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 AP5M1Q9H0R1 490 aa7.39□□□□□ -1.23
VPS25-204ENST00000589577 NSUN3Q9H649 340 aaKnown RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 SALL2Q9Y467 1007 aaPredicted RBP7.39□□□□□ -1.23
VPS25-204ENST00000589577 KIAA1671Q9BY89 1806 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 OTOGLQ3ZCN5 2332 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 LINC01565O15544 149 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 ZEB2O60315 1214 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 KDM4AO75164 1064 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 CXCL10P02778 98 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 EEF2P13639 858 aaKnown RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 GTF2F1P35269 517 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS25-204ENST00000589577 SLC4A3P48751 1232 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 HTRA4P83105 476 aaPredicted RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 MTX1Q13505 466 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 PTPROQ16827 1216 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 LRRFIP1Q32MZ4 808 aaKnown RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 CNKSR3Q6P9H4 555 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 FBXO16Q8IX29 292 aaPredicted RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 ANKRD35Q8N283 1001 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 RETREG2Q8NC44 543 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 SSH1Q8WYL5 1049 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 DHX38Q92620 1227 aaKnown RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 MEIS3Q99687 375 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 SLF1Q9BQI6 1058 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 DBNDD2Q9BQY9 259 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 SH2D4AQ9H788 454 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 RAVER2Q9HCJ3 691 aaKnown RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 CTNNA3Q9UI47 895 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 Q9Y3F1 56 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 SETXQ7Z333 2677 aaKnown RBP7.38□□□□□ -1.23
VPS25-204ENST00000589577 SPEGQ15772 3267 aa7.38□□□□□ -1.23
VPS25-204ENST00000589577 ZBED9Q6R2W3 1325 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 ABHD14A-ACY1A0A1B0GW23 586 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 SRGAP3O43295 1099 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 IGSF3O75054 1194 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 IDH1O75874 414 aaKnown RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 POLR3DP05423 398 aaPredicted RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 CENPBP07199 599 aaPredicted RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 NUBP1P53384 320 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 RBL2Q08999 1139 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 GPM6BQ13491 265 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 BFSP2Q13515 415 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 MBTPS1Q14703 1052 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 FAM47CQ5HY64 1035 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 NFRKBQ6P4R8 1299 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 TRAF7Q6Q0C0 670 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS25-204ENST00000589577 EEPD1Q7L9B9 569 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 DGLUCYQ7Z3D6 616 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 CERS3Q8IU89 383 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 CPXCR1Q8N123 301 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 TMEM105Q8N8V8 129 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 AFAP1L1Q8TED9 768 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 NKD2Q969F2 451 aaPredicted RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 MSLNLQ96KJ4 702 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 ZNF512BQ96KM6 892 aaPredicted RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS25-204ENST00000589577 A1CFQ9NQ94 594 aaKnown RBP7.37□□□□□ -1.23
VPS25-204ENST00000589577 MCM9Q9NXL9 1143 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 INSL6Q9Y581 213 aa7.37□□□□□ -1.23
VPS25-204ENST00000589577 ZZEF1O43149 2961 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 FASNP49327 2511 aaKnown RBP7.36□□□□□ -1.23
VPS25-204ENST00000589577 FAM208BQ5VWN6 2430 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 EYA4O95677 639 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 MYL3P08590 195 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 LINC00271P0C7V0 271 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 SELPP16109 830 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 DUSP28Q4G0W2 176 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 TTC39AQ5SRH9 613 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 IQSEC1Q6DN90 963 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 LRRC8DQ7L1W4 858 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 FBXO11Q86XK2 927 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 CHST13Q8NET6 341 aa7.36□□□□□ -1.23
VPS25-204ENST00000589577 SDR42E1Q8WUS8 393 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms