RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CARMIL2Q6F5E8 1435 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 MEFVO15553 781 aaPredicted RBP6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 EFEMP2O95967 443 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 TXKP42681 527 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 KIR3DS1Q14943 382 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 IQCEQ6IPM2 695 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 KREMEN2Q8NCW0 462 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 SHISA4Q96DD7 197 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 IPO9Q96P70 1041 aaKnown RBP6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 MMP19Q99542 508 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 ACSL6Q9UKU0 697 aa6.88□□□□□ -1.31
SMCHD1-204ENST00000581226 DLX3O60479 287 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 PNLIPP16233 465 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 CYP4F8P98187 520 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 MAP4K2Q12851 820 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 SLC35F1Q5T1Q4 408 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 E4F1Q66K89 784 aaPredicted RBP6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 MPZL3Q6UWV2 235 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 PPIL6Q8IXY8 311 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 LILRB2Q8N423 598 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 DIO2Q92813 273 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 OSBP2Q969R2 916 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 CRTAC1Q9NQ79 661 aa6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 TMEFF2Q9UIK5 374 aaPredicted RBP6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 YBX2Q9Y2T7 364 aaKnown RBP6.87□□□□□ -1.31
SMCHD1-204ENST00000581226 A0A1W2PQJ5 194 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 C7orf72A4D263 438 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 ZNF503-AS2A6NEH8 195 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 ARNTLO00327 626 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 NPHS1O60500 1241 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 ARL4AP40617 200 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 MVKQ03426 396 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 LONRF2Q1L5Z9 754 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 DENND5AQ6IQ26 1287 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 USP53Q70EK8 1073 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 CCDC103Q8IW40 242 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 SCUBE1Q8IWY4 988 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 NLGN2Q8NFZ4 835 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 THAP3Q8WTV1 239 aaPredicted RBP6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 LIN37Q96GY3 246 aaPredicted RBP6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 C1orf159Q96HA4 380 aa6.86□□□□□ -1.31
SMCHD1-204ENST00000581226 TRBV23-1A0A0A0MS06 115 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 MSL3P1P0C860 447 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 YBX3P16989 372 aaKnown RBP eCLIP6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 CORO7P57737 925 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 INF2Q27J81 1249 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 C2orf27AQ580R0 203 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 FAM209AQ5JX71 171 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 ACBD5Q5T8D3 534 aaPredicted RBP6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 FOXB2Q5VYV0 432 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 MBLAC2Q68D91 279 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 INTS4Q96HW7 963 aaKnown RBP6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 SLC26A8Q96RN1 970 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 SLC6A17Q9H1V8 727 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 PDLIM7Q9NR12 457 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 GULP1Q9UBP9 304 aa6.85□□□□□ -1.31
SMCHD1-204ENST00000581226 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 PPP1R11O60927 126 aaPredicted RBP6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 IGSF3O75054 1194 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 TACR1P25103 407 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 PDE6BP35913 854 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 LTBRP36941 435 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 KCNAB2Q13303 367 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 ZC3H12BQ5HYM0 836 aaKnown RBP6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 ADGRF1Q5T601 910 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 DHRS4Q9BTZ2 278 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 KRTAP4-2Q9BYR5 136 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 FAM53CQ9NYF3 392 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 RWDD3Q9Y3V2 267 aa6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.84□□□□□ -1.31
SMCHD1-204ENST00000581226 BLACEA4D250 179 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 MYO1BO43795 1136 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 SDHBP21912 280 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 SUMO1P63165 101 aaKnown RBP6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 TESK1Q15569 626 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 NTRK3Q16288 839 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 BICRALQ6AI39 1079 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 LZTR1Q8N653 840 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 JMYQ8N9B5 988 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 RCBTB1Q8NDN9 531 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 ZSWIM2Q8NEG5 633 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 USP33Q8TEY7 942 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 EXOC2Q96KP1 924 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 KRTAP17-1Q9BYP8 105 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 BTG4Q9NY30 223 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 TIMM13Q9Y5L4 95 aaPredicted RBP6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 NPFFR2Q9Y5X5 522 aa6.83□□□□□ -1.32
SMCHD1-204ENST00000581226 LRRC10BA6NIK2 292 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 FUCA1P04066 466 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 LCP1P13796 627 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 RPL11P62913 178 aaKnown RBP6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 MLANAQ16655 118 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 PRR23BQ6ZRT6 265 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 IRF2BP1Q8IU81 584 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 SH3TC2Q8TF17 1288 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 DCAF4Q8WV16 495 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 DPF3Q92784 378 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 CHAMP1Q96JM3 812 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 DIRC2Q96SL1 478 aa6.82□□□□□ -1.32
SMCHD1-204ENST00000581226 PHF20Q9BVI0 1012 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms