RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TMEM260Q9NX78 707 aa18.46■□□□□ 0.55
SS18-211ENST00000578954 BIN2Q9UBW5 565 aaPredicted RBP18.46■□□□□ 0.55
SS18-211ENST00000578954 TOB1P50616 345 aaPredicted RBP18.45■□□□□ 0.54
SS18-211ENST00000578954 ERVK-9P63128 1117 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 ERVK-24P63145 666 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 NONOQ15233 471 aaKnown RBP eCLIP18.45■□□□□ 0.54
SS18-211ENST00000578954 JAKMIP3Q5VZ66 844 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 SMCR8Q8TEV9 937 aaPredicted RBP18.45■□□□□ 0.54
SS18-211ENST00000578954 TBC1D5Q92609 795 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 CHAMP1Q96JM3 812 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 ZNF396Q96N95 335 aaPredicted RBP18.45■□□□□ 0.54
SS18-211ENST00000578954 ZIC5Q96T25 663 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 PAGR1Q9BTK6 254 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 MOV10L1Q9BXT6 1211 aaKnown RBP18.45■□□□□ 0.54
SS18-211ENST00000578954 FBXO40Q9UH90 709 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 THSD7BQ9C0I4 1608 aa18.45■□□□□ 0.54
SS18-211ENST00000578954 NASPP49321 788 aaPredicted RBP18.44■□□□□ 0.54
SS18-211ENST00000578954 KRT85P78386 507 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 PLS1Q14651 629 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 FAM110CQ1W6H9 321 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 Q3C1V9 767 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 CRYGNQ8WXF5 182 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 USP28Q96RU2 1077 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 ANO3Q9BYT9 981 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 POLR3EQ9NVU0 708 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 NOL7Q9UMY1 257 aaKnown RBP18.44■□□□□ 0.54
SS18-211ENST00000578954 MORC2Q9Y6X9 1032 aaPredicted RBP18.44■□□□□ 0.54
SS18-211ENST00000578954 TCHHQ07283 1943 aa18.44■□□□□ 0.54
SS18-211ENST00000578954 PEX10O60683 326 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 CFBP00751 764 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 TAF1CQ15572 869 aaPredicted RBP18.43■□□□□ 0.54
SS18-211ENST00000578954 PAXIP1Q6ZW49 1069 aaPredicted RBP18.43■□□□□ 0.54
SS18-211ENST00000578954 TMEM87AQ8NBN3 555 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 GPRC5AQ8NFJ5 357 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 SYTL5Q8TDW5 730 aaPredicted RBP18.43■□□□□ 0.54
SS18-211ENST00000578954 HOMER2Q9NSB8 354 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 RTEL1Q9NZ71 1219 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 CFAP45Q9UL16 551 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 FRMPD4Q14CM0 1322 aa18.43■□□□□ 0.54
SS18-211ENST00000578954 EDIL3O43854 480 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 YEATS4O95619 227 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 BCRP11274 1271 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 HOXA13P31271 388 aaPredicted RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 SREBF1P36956 1147 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 RPS6P62753 249 aaKnown RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 CCNA1P78396 465 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 ORC2Q13416 577 aaPredicted RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 INF2Q27J81 1249 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 FOXD4L6Q3SYB3 417 aaPredicted RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 ANO1Q5XXA6 986 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 FOXD4L3Q6VB84 417 aaPredicted RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 RNF207Q6ZRF8 634 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 NEK8Q86SG6 692 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 TBCKQ8TEA7 893 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 SCAND2PQ9GZW5 306 aaPredicted RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 MROH8Q9H579 483 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 A1CFQ9NQ94 594 aaKnown RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.42■□□□□ 0.54
SS18-211ENST00000578954 CNPY2Q9Y2B0 182 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 RPTORQ8N122 1335 aa18.42■□□□□ 0.54
SS18-211ENST00000578954 SPDYE3A6NKU9 549 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 WNT7AO00755 349 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 ALDH1A1P00352 501 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 ERCC3P19447 782 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 PTPAQ15257 358 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 TTC38Q5R3I4 469 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 MOXD1Q6UVY6 613 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 SLC30A10Q6XR72 485 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 ANKRD13CQ8N6S4 541 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 PGBD1Q96JS3 809 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 FTOQ9C0B1 505 aaKnown RBP eCLIP18.41■□□□□ 0.54
SS18-211ENST00000578954 CYP39A1Q9NYL5 469 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 COL20A1Q9P218 1284 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 RCOR1Q9UKL0 485 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 PFASO15067 1338 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 MYH7BA7E2Y1 1941 aa18.41■□□□□ 0.54
SS18-211ENST00000578954 CA12O43570 354 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 TLR2O60603 784 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 AOC2O75106 756 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 CYP3A4P08684 503 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 MAP2K2P36507 400 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 C17orf99Q6UX52 265 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 NSMFQ6X4W1 530 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 NCAPG2Q86XI2 1143 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 POTEDQ86YR6 584 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 LINC00301Q8NCQ3 95 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 EHMT1Q9H9B1 1298 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 ZFYVE28Q9HCC9 887 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 TFIP11Q9UBB9 837 aaKnown RBP18.4■□□□□ 0.54
SS18-211ENST00000578954 PCDHB6Q9Y5E3 794 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 CLIC4Q9Y696 253 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 ELP1O95163 1332 aa18.4■□□□□ 0.54
SS18-211ENST00000578954 LCTP09848 1927 aa18.39■□□□□ 0.53
SS18-211ENST00000578954 BMP15O95972 392 aa18.39■□□□□ 0.53
SS18-211ENST00000578954 CIITAP33076 1130 aa18.39■□□□□ 0.53
SS18-211ENST00000578954 USP11P51784 963 aa18.39■□□□□ 0.53
SS18-211ENST00000578954 BAATQ14032 418 aaPredicted RBP18.39■□□□□ 0.53
SS18-211ENST00000578954 SF3A1Q15459 793 aaKnown RBP18.39■□□□□ 0.53
SS18-211ENST00000578954 LEO1Q8WVC0 666 aaPredicted RBP18.39■□□□□ 0.53
SS18-211ENST00000578954 MBOAT7Q96N66 472 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms