RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 MPHOSPH6Q99547 160 aaKnown RBP23.4■■□□□ 1.34
NUP88-204ENST00000572290 TSEN34Q9BSV6 310 aaKnown RBP23.4■■□□□ 1.34
NUP88-204ENST00000572290 LRRC2Q9BYS8 371 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 COLQQ9Y215 455 aaPredicted RBP23.4■■□□□ 1.34
NUP88-204ENST00000572290 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.39■■□□□ 1.33
NUP88-204ENST00000572290 CYTH3O43739 400 aa23.39■■□□□ 1.33
NUP88-204ENST00000572290 KIF5BP33176 963 aa23.39■■□□□ 1.33
NUP88-204ENST00000572290 TAPT1Q6NXT6 567 aa23.39■■□□□ 1.33
NUP88-204ENST00000572290 NOL8Q76FK4 1167 aaKnown RBP23.39■■□□□ 1.33
NUP88-204ENST00000572290 PDGFCQ9NRA1 345 aa23.39■■□□□ 1.33
NUP88-204ENST00000572290 B4DLN1 442 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 PPP1R11O60927 126 aaPredicted RBP23.38■■□□□ 1.33
NUP88-204ENST00000572290 C6orf222P0C671 652 aaPredicted RBP23.38■■□□□ 1.33
NUP88-204ENST00000572290 MRPL12P52815 198 aaKnown RBP23.38■■□□□ 1.33
NUP88-204ENST00000572290 GJA9P57773 515 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 RTP1P59025 263 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 PDE4DQ08499 809 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 TRAF1Q13077 416 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 IQSEC1Q6DN90 963 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 SYTL5Q8TDW5 730 aaPredicted RBP23.38■■□□□ 1.33
NUP88-204ENST00000572290 UPF3AQ9H1J1 476 aaKnown RBP23.38■■□□□ 1.33
NUP88-204ENST00000572290 PCDHA1Q9Y5I3 950 aa23.38■■□□□ 1.33
NUP88-204ENST00000572290 MYADML2A6NDP7 307 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 MOXD2PA6NHM9 499 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 REC8O95072 547 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 CALM1P0DP23 149 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 CALM2P0DP24 149 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 CALM3P0DP25 149 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 SYN1P17600 705 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 EDNRBP24530 442 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 CST5P28325 142 aaPredicted RBP23.37■■□□□ 1.33
NUP88-204ENST00000572290 KCNA10Q16322 511 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 ADCK5Q3MIX3 580 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 HABP4Q5JVS0 413 aaKnown RBP23.37■■□□□ 1.33
NUP88-204ENST00000572290 CCSAPQ6IQ19 270 aaPredicted RBP23.37■■□□□ 1.33
NUP88-204ENST00000572290 DHX32Q7L7V1 743 aaKnown RBP23.37■■□□□ 1.33
NUP88-204ENST00000572290 GNEQ9Y223 722 aaKnown RBP23.37■■□□□ 1.33
NUP88-204ENST00000572290 ATP11BQ9Y2G3 1177 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 SLC12A7Q9Y666 1083 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 FRMPD3Q5JV73 1810 aa23.37■■□□□ 1.33
NUP88-204ENST00000572290 PNMA6FA0A0J9YX94 578 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 A0A1W2PQ45 241 aaPredicted RBP23.36■■□□□ 1.33
NUP88-204ENST00000572290 A0A1W2PQY0 241 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 CFBP00751 764 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 SMPD1P17405 629 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 GNAQP50148 359 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 ACLYP53396 1101 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 IRX5P78411 483 aaPredicted RBP23.36■■□□□ 1.33
NUP88-204ENST00000572290 EXOSC10Q01780 885 aaKnown RBP23.36■■□□□ 1.33
NUP88-204ENST00000572290 SNX17Q15036 470 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 SGMS1Q86VZ5 419 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 PCSK9Q8NBP7 692 aaKnown RBP23.36■■□□□ 1.33
NUP88-204ENST00000572290 TAAR1Q96RJ0 339 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 LZTS2Q9BRK4 669 aa23.36■■□□□ 1.33
NUP88-204ENST00000572290 SMARCA1P28370 1054 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 HSPA4P34932 840 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 GNASQ5JWF2 1037 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 C1orf53Q5VUE5 145 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 TLK2Q86UE8 772 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 NSUN6Q8TEA1 469 aaKnown RBP23.35■■□□□ 1.33
NUP88-204ENST00000572290 KCNB2Q92953 911 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 SPZ1Q9BXG8 430 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 AP5M1Q9H0R1 490 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 COL20A1Q9P218 1284 aa23.35■■□□□ 1.33
NUP88-204ENST00000572290 RBM47A0AV96 593 aaKnown RBP23.34■■□□□ 1.33
NUP88-204ENST00000572290 OPLAHO14841 1288 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 DYNC1LI2O43237 492 aaPredicted RBP23.34■■□□□ 1.33
NUP88-204ENST00000572290 HMGB1P09429 215 aaKnown RBP23.34■■□□□ 1.33
NUP88-204ENST00000572290 RXRAP19793 462 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 NKX3-2P78367 333 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 GHRHRQ02643 423 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 TRIM60Q495X7 471 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 SYNE3Q6ZMZ3 975 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 RAB11FIP4Q86YS3 637 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 PIBF1Q8WXW3 757 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 TCEANC2Q96MN5 208 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 STARD7Q9NQZ5 370 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 MAP3K20Q9NYL2 800 aaKnown RBP23.34■■□□□ 1.33
NUP88-204ENST00000572290 Q9Y3F1 56 aa23.34■■□□□ 1.33
NUP88-204ENST00000572290 CTAGE5O15320 804 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 PLEKHA8P1O95397 391 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 ASGR1P07306 291 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 HSD17B4P51659 736 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 DUSP28Q4G0W2 176 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 TMEM63BQ5T3F8 832 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 SAMD3Q8N6K7 520 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 RRP36Q96EU6 259 aaKnown RBP23.33■■□□□ 1.33
NUP88-204ENST00000572290 GLT1D1Q96MS3 346 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 RMDN3Q96TC7 470 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 WDR11Q9BZH6 1224 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 PRO3102Q9H379 93 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 PCDH10Q9P2E7 1040 aa23.33■■□□□ 1.33
NUP88-204ENST00000572290 RBM27Q9P2N5 1060 aaKnown RBP23.33■■□□□ 1.33
NUP88-204ENST00000572290 BEX3Q00994 111 aa23.32■■□□□ 1.32
NUP88-204ENST00000572290 ARHGEF16Q5VV41 709 aa23.32■■□□□ 1.32
NUP88-204ENST00000572290 MICU3Q86XE3 530 aa23.32■■□□□ 1.32
NUP88-204ENST00000572290 SRBD1Q8N5C6 995 aaKnown RBP23.32■■□□□ 1.32
NUP88-204ENST00000572290 FANCBQ8NB91 859 aa23.32■■□□□ 1.32
NUP88-204ENST00000572290 IWS1Q96ST2 819 aa23.32■■□□□ 1.32
NUP88-204ENST00000572290 SNX14Q9Y5W7 946 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms