RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 RASGRP2Q7LDG7 609 aa11.39□□□□□ -0.59
CIITA-207ENST00000571545 MCF2L2Q86YR7 1114 aa11.39□□□□□ -0.59
CIITA-207ENST00000571545 TRIM43Q96BQ3 446 aaPredicted RBP11.39□□□□□ -0.59
CIITA-207ENST00000571545 GNEQ9Y223 722 aaKnown RBP11.39□□□□□ -0.59
CIITA-207ENST00000571545 TMEM265A0A087WTH1 108 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 ERICH2A1L162 156 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 NFIBO00712 420 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 TIMP1P01033 207 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 PARP1P09874 1014 aaKnown RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 SNAP25P60880 206 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 SMAD3P84022 425 aaKnown RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 PDE4DQ08499 809 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 FAAP100Q0VG06 881 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 PPIGQ13427 754 aaKnown RBP eCLIP11.38□□□□□ -0.59
CIITA-207ENST00000571545 CDC37Q16543 378 aaPredicted RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 DUSP28Q4G0W2 176 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 IFIT1BQ5T764 474 aaKnown RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 KIAA1211Q6ZU35 1233 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 FBXO16Q8IX29 292 aaPredicted RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 PIP4P2Q8N4L2 257 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 TMEM199Q8N511 208 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 ENAHQ8N8S7 591 aaPredicted RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 RNPC3Q96LT9 517 aaKnown RBP11.38□□□□□ -0.59
CIITA-207ENST00000571545 ZKSCAN3Q9BRR0 538 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 POLR3EQ9NVU0 708 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 STXBP5LQ9Y2K9 1186 aa11.38□□□□□ -0.59
CIITA-207ENST00000571545 MYADML2A6NDP7 307 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 ADCY6O43306 1168 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 DHX16O60231 1041 aaKnown RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 SMPD1P17405 629 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 CALML3P27482 149 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 CDK7P50613 346 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 RPS6P62753 249 aaKnown RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 PPP2R5BQ15173 497 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 MFSD5Q6N075 450 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 SLC30A10Q6XR72 485 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 SH3RF1Q7Z6J0 888 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 RALYLQ86SE5 291 aaKnown RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 FAM126BQ8IXS8 530 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 SAMD3Q8N6K7 520 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 SCFD2Q8WU76 684 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 WDR11Q9BZH6 1224 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 MTIF3Q9H2K0 278 aaKnown RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 GPHNQ9NQX3 736 aaPredicted RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 ZSWIM5Q9P217 1185 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 TBX21Q9UL17 535 aa11.37□□□□□ -0.59
CIITA-207ENST00000571545 MRPL11Q9Y3B7 192 aaKnown RBP11.37□□□□□ -0.59
CIITA-207ENST00000571545 ASTN1O14525 1302 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.36□□□□□ -0.59
CIITA-207ENST00000571545 DYNC1LI2O43237 492 aaPredicted RBP11.36□□□□□ -0.59
CIITA-207ENST00000571545 KPNA6O60684 536 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 GSPT1P15170 499 aaKnown RBP11.36□□□□□ -0.59
CIITA-207ENST00000571545 EDNRBP24530 442 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 ITGA7Q13683 1181 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 SHHQ15465 462 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 USH1GQ495M9 461 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 TAPT1Q6NXT6 567 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 PSRC1Q6PGN9 363 aaPredicted RBP11.36□□□□□ -0.59
CIITA-207ENST00000571545 EEPD1Q7L9B9 569 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 ADGRF4Q8IZF3 695 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 CLEC4DQ8WXI8 215 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 MTMR10Q9NXD2 777 aa11.36□□□□□ -0.59
CIITA-207ENST00000571545 MAP3K20Q9NYL2 800 aaKnown RBP11.36□□□□□ -0.59
CIITA-207ENST00000571545 RBM47A0AV96 593 aaKnown RBP11.35□□□□□ -0.59
CIITA-207ENST00000571545 CTAGE5O15320 804 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 SUPT20HL2P0C7V6 817 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 GOLGA8HP0CJ92 632 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 BEX3Q00994 111 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 TTLL4Q14679 1199 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 CXCL17Q6UXB2 119 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 FBXO11Q86XK2 927 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 SLC43A3Q8NBI5 491 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 OR6J1Q8NGC5 347 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 NCOA7Q8NI08 942 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 NSUN6Q8TEA1 469 aaKnown RBP11.35□□□□□ -0.59
CIITA-207ENST00000571545 IWS1Q96ST2 819 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 AMNQ9BXJ7 453 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 UBA5Q9GZZ9 404 aa11.35□□□□□ -0.59
CIITA-207ENST00000571545 LAMA3Q16787 3333 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 CD4P01730 458 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 CHMLP26374 656 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 PDE4AP27815 886 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 FXR2P51116 673 aaKnown RBP eCLIP11.34□□□□□ -0.59
CIITA-207ENST00000571545 QRICH1Q2TAL8 776 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 C9orf50Q5SZB4 431 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 Q7L0L9 218 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 MTA3Q9BTC8 594 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 HIPK3Q9H422 1215 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 PDGFCQ9NRA1 345 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 KIAA1217Q5T5P2 1943 aa11.34□□□□□ -0.59
CIITA-207ENST00000571545 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.33□□□□□ -0.6
CIITA-207ENST00000571545 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.33□□□□□ -0.6
CIITA-207ENST00000571545 SPDYE4A6NLX3 237 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 KLRF2D3W0D1 207 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 ZBTB5O15062 677 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 SGSM2O43147 1006 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 PFKMP08237 780 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 CYP21A2P08686 494 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 TXNP10599 105 aaKnown RBP11.33□□□□□ -0.6
CIITA-207ENST00000571545 PTPN11Q06124 597 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms