RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NSRP1Q9H0G5 558 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 BIN2Q9UBW5 565 aaPredicted RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 DMGDHQ9UI17 866 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 UTP11Q9Y3A2 253 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 EXOC5O00471 708 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 KLK7P49862 253 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 NEDD9Q14511 834 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 HIBCHQ6NVY1 386 aaPredicted RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 CCDC24Q8N4L8 307 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 FAM212AQ96EL1 285 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 RRP36Q96EU6 259 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 PCDH11XQ9BZA7 1347 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 PCDH11YQ9BZA8 1340 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 TSKSQ9UJT2 592 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 ASAP1Q9ULH1 1129 aa12.59□□□□□ -0.39
CLN3-238ENST00000569430 NOVA2Q9UNW9 492 aaKnown RBP12.59□□□□□ -0.39
CLN3-238ENST00000569430 CPDO75976 1380 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 EIF6P56537 245 aaKnown RBP12.58□□□□□ -0.4
CLN3-238ENST00000569430 PROCA1Q8NCQ7 364 aaPredicted RBP12.58□□□□□ -0.4
CLN3-238ENST00000569430 HPS3Q969F9 1004 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 ACSBG1Q96GR2 724 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 AP1M1Q9BXS5 423 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 LRRC27Q9C0I9 530 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 CXorf56Q9H5V9 222 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 VIPAS39Q9H9C1 493 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 ADAMTS1Q9UHI8 967 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 FBXO3Q9UK99 471 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 RAB21Q9UL25 225 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 PPP1R3GB7ZBB8 358 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 EIF3HO15372 352 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-238ENST00000569430 NMT2O60551 498 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 PLCG1P19174 1290 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 CCNE1P24864 410 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 DPYDQ12882 1025 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 PPP2R5AQ15172 486 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 TMC4Q7Z404 712 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 SPATS2Q86XZ4 545 aaKnown RBP12.58□□□□□ -0.4
CLN3-238ENST00000569430 PNMA1Q8ND90 353 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-238ENST00000569430 GSG1L2A8MUP6 293 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 ABCB4P21439 1286 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 GFPT1Q06210 699 aaPredicted RBP12.58□□□□□ -0.4
CLN3-238ENST00000569430 RETREG2Q8NC44 543 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 DISC1Q9NRI5 854 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 LIMA1Q9UHB6 759 aaKnown RBP12.58□□□□□ -0.4
CLN3-238ENST00000569430 PLAAQ9Y263 795 aa12.58□□□□□ -0.4
CLN3-238ENST00000569430 PIK3C2AO00443 1686 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 STK36Q9NRP7 1315 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 PRPF3O43395 683 aaKnown RBP12.57□□□□□ -0.4
CLN3-238ENST00000569430 ARL8AQ96BM9 186 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 DHTKD1Q96HY7 919 aaPredicted RBP12.57□□□□□ -0.4
CLN3-238ENST00000569430 TMX4Q9H1E5 349 aaPredicted RBP12.57□□□□□ -0.4
CLN3-238ENST00000569430 NDST4Q9H3R1 872 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 MROH5Q6ZUA9 1318 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 SMCO2A6NFE2 343 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 CHUKO15111 745 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 BAG3O95817 575 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 GCKP35557 465 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 PPP1R2P41236 205 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 LLGL1Q15334 1064 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 TMEM139Q8IV31 216 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 ZSCAN29Q8IWY8 852 aaPredicted RBP12.57□□□□□ -0.4
CLN3-238ENST00000569430 ATP8A1Q9Y2Q0 1164 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 ENAHQ8N8S7 591 aaPredicted RBP12.57□□□□□ -0.4
CLN3-238ENST00000569430 KANSL2Q9H9L4 492 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 SNX12Q9UMY4 172 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
CLN3-238ENST00000569430 AKAP12Q02952 1782 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 WDR19Q8NEZ3 1342 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 A0A1W2PRG0 241 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 ANO9A1A5B4 782 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CETN3O15182 167 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CTNND1O60716 968 aaKnown RBP12.56□□□□□ -0.4
CLN3-238ENST00000569430 OR52Z1P0C646 297 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 HLFQ16534 295 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 THAP9Q9H5L6 903 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 SLC24A3Q9HC58 644 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 SWAP70Q9UH65 585 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 MEFVO15553 781 aaPredicted RBP12.56□□□□□ -0.4
CLN3-238ENST00000569430 PLEKP08567 350 aaPredicted RBP12.56□□□□□ -0.4
CLN3-238ENST00000569430 APBA1Q02410 837 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CALCRLQ16602 461 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 WDR93Q6P2C0 686 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CPVLQ9H3G5 476 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 GPCPD1Q9NPB8 672 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 RASAL2Q9UJF2 1139 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CAPN11Q9UMQ6 739 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 TARSL2A2RTX5 802 aaKnown RBP12.56□□□□□ -0.4
CLN3-238ENST00000569430 LRRC53A6NM62 1247 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 PALMO75781 387 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CACNB1Q02641 598 aaPredicted RBP12.56□□□□□ -0.4
CLN3-238ENST00000569430 CCDC50Q8IVM0 306 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 ANKRD42Q8N9B4 389 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CD2APQ9Y5K6 639 aa12.56□□□□□ -0.4
CLN3-238ENST00000569430 CDHR2Q9BYE9 1310 aa12.55□□□□□ -0.4
CLN3-238ENST00000569430 TBCAO75347 108 aaKnown RBP12.55□□□□□ -0.4
CLN3-238ENST00000569430 PDE6BP35913 854 aa12.55□□□□□ -0.4
CLN3-238ENST00000569430 CARSP49589 748 aaKnown RBP12.55□□□□□ -0.4
CLN3-238ENST00000569430 TRAPPC11Q7Z392 1133 aa12.55□□□□□ -0.4
CLN3-238ENST00000569430 FAM133AQ8N9E0 248 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms