RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 OPA1O60313 960 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 SYF2O95926 243 aaKnown RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 OR52Z1P0C646 297 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 GFPT1Q06210 699 aaPredicted RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 IPO4Q8TEX9 1081 aaKnown RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 TAF4BQ92750 862 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 FAM84BQ96KN1 310 aaPredicted RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 THAP9Q9H5L6 903 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 ERVV-1B6SEH8 477 aa16.08■□□□□ 0.17
VPS35-210ENST00000568784 ERLIN2O94905 339 aa16.08■□□□□ 0.17
VPS35-210ENST00000568784 NONOQ15233 471 aaKnown RBP eCLIP16.08■□□□□ 0.17
VPS35-210ENST00000568784 CCDC43Q96MW1 224 aaKnown RBP16.08■□□□□ 0.17
VPS35-210ENST00000568784 PARP10Q53GL7 1025 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 TCERG1LQ5VWI1 586 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 SPTY2D1Q68D10 685 aaPredicted RBP16.08■□□□□ 0.16
VPS35-210ENST00000568784 SAMD1Q6SPF0 538 aaPredicted RBP16.08■□□□□ 0.16
VPS35-210ENST00000568784 FAM184BQ9ULE4 1060 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 NFU1Q9UMS0 254 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 SCN11AQ9UI33 1791 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 GOLGA6L10A6NI86 522 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 LRRC53A6NM62 1247 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 WDR93Q6P2C0 686 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 C3orf67Q6ZVT6 689 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 RPGRIP1Q96KN7 1286 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 EPB41L5Q9HCM4 733 aa16.08■□□□□ 0.16
VPS35-210ENST00000568784 LRRC10BA6NIK2 292 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 NKRFO15226 690 aaKnown RBP eCLIP16.07■□□□□ 0.16
VPS35-210ENST00000568784 KRT14P02533 472 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 EHHADHQ08426 723 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 NPY5RQ15761 445 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 ARL6IP4Q66PJ3 421 aaKnown RBP16.07■□□□□ 0.16
VPS35-210ENST00000568784 CNNM4Q6P4Q7 775 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 PACS2Q86VP3 889 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 SPATA4Q8NEY3 305 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 TSG101Q99816 390 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 HYOU1Q9Y4L1 999 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 FRMPD2Q68DX3 1309 aaPredicted RBP16.07■□□□□ 0.16
VPS35-210ENST00000568784 INPP5BP32019 993 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 NBPF5PQ86XG9 351 aaPredicted RBP16.07■□□□□ 0.16
VPS35-210ENST00000568784 BRIP1Q9BX63 1249 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 NDST4Q9H3R1 872 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 C6orf50Q9HD87 102 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 SRGNP10124 158 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 SETQ01105 290 aaPredicted RBP16.07■□□□□ 0.16
VPS35-210ENST00000568784 SNX29Q8TEQ0 813 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 GJA10Q969M2 543 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 TSGA10Q9BZW7 698 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 MINPP1Q9UNW1 487 aa16.07■□□□□ 0.16
VPS35-210ENST00000568784 LOC102724428A0A0B4J2F2 783 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 ZSCAN5CA6NGD5 496 aaPredicted RBP16.06■□□□□ 0.16
VPS35-210ENST00000568784 GNAQP50148 359 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 RCAN1P53805 252 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 SIK1P57059 783 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 TMEM266Q2M3C6 531 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 NAALADL2Q58DX5 795 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 OTUD6BQ8N6M0 293 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 TBCKQ8TEA7 893 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 DHTKD1Q96HY7 919 aaPredicted RBP16.06■□□□□ 0.16
VPS35-210ENST00000568784 KRT12Q99456 494 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 DNAJC7Q99615 494 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 TMEM260Q9NX78 707 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 POTEMA6NI47 508 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 TTI2Q6NXR4 508 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 NOX5Q96PH1 765 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 OSBPL9Q96SU4 736 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 TRIM9Q9C026 710 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 GPCPD1Q9NPB8 672 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 FAM169AQ9Y6X4 670 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 MST1RQ04912 1400 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 POLR2FP61218 127 aaKnown RBP16.06■□□□□ 0.16
VPS35-210ENST00000568784 PPFIA1Q13136 1202 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 ARL8AQ96BM9 186 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 SNX12Q9UMY4 172 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 PCDHA6Q9UN73 950 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 PCDHA8Q9Y5H6 950 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 ATRNO75882 1429 aa16.06■□□□□ 0.16
VPS35-210ENST00000568784 PDS5AQ29RF7 1337 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 A0A1W2PQC6 194 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 HEXIM1O94992 359 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 LDHBP07195 334 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 IRAK1P51617 712 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 NSUN4Q96CB9 384 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 CAPN7Q9Y6W3 813 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 EPHB6O15197 1021 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 PICALMQ13492 652 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 PRPF4BQ13523 1007 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 UBE4AQ14139 1066 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 DDB1Q16531 1140 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 FBXW10Q5XX13 1052 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 DNAAF5Q86Y56 855 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 NLRP3Q96P20 1036 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 DUSP9Q99956 384 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 PPANQ9NQ55 473 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 SLC1A4P43007 532 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 RPS8P62241 208 aaKnown RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 CCDC170Q8IYT3 715 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 GIMAP8Q8ND71 665 aaPredicted RBP16.05■□□□□ 0.16
VPS35-210ENST00000568784 TNFRSF25Q93038 417 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 COA7Q96BR5 231 aa16.05■□□□□ 0.16
VPS35-210ENST00000568784 TRIM31Q9BZY9 425 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms