RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DBHP09172 617 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 SLC9A5Q14940 896 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 PLEKHN1Q494U1 663 aaPredicted RBP4.76□□□□□ -1.65
VPS35-207ENST00000568191 DACT3Q96B18 629 aaPredicted RBP4.76□□□□□ -1.65
VPS35-207ENST00000568191 PEX11GQ96HA9 241 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 PWWP2AQ96N64 755 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 ACBD3Q9H3P7 528 aa4.76□□□□□ -1.65
VPS35-207ENST00000568191 CGGBP1Q9UFW8 167 aaPredicted RBP4.76□□□□□ -1.65
VPS35-207ENST00000568191 IRS4O14654 1257 aaPredicted RBP4.75□□□□□ -1.65
VPS35-207ENST00000568191 NCAM1P13591 858 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 TACR1P25103 407 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 ERCC5P28715 1186 aaPredicted RBP4.75□□□□□ -1.65
VPS35-207ENST00000568191 ZNF200P98182 395 aaPredicted RBP4.75□□□□□ -1.65
VPS35-207ENST00000568191 FAM129CQ86XR2 697 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 MARCH10Q8NA82 808 aaPredicted RBP4.75□□□□□ -1.65
VPS35-207ENST00000568191 BVESQ8NE79 360 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 RNF38Q9H0F5 515 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 LRP2BPQ9P2M1 347 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 R3HCC1Q9Y3T6 440 aaKnown RBP4.75□□□□□ -1.65
VPS35-207ENST00000568191 PCDHA5Q9Y5H7 936 aa4.75□□□□□ -1.65
VPS35-207ENST00000568191 KCNH1O95259 989 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 MSL3P1P0C860 447 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 PRR5P85299 388 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 LCE4AQ5TA78 99 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 IQCEQ6IPM2 695 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 IGDCC3Q8IVU1 814 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 NETO2Q8NC67 525 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 PANK1Q8TE04 598 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 KLHL6Q8WZ60 621 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 ALG3Q92685 438 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 RELTQ969Z4 430 aa4.74□□□□□ -1.65
VPS35-207ENST00000568191 KIAA1522Q9P206 1035 aaPredicted RBP4.74□□□□□ -1.65
VPS35-207ENST00000568191 IRS2Q9Y4H2 1338 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 ZC3H12DA2A288 527 aaKnown RBP4.73□□□□□ -1.65
VPS35-207ENST00000568191 ATF4P18848 351 aaPredicted RBP4.73□□□□□ -1.65
VPS35-207ENST00000568191 HOXA5P20719 270 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 NCKAP1LP55160 1127 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 CAP1Q01518 475 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 NFIXQ14938 502 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 LINC01356Q8N9X3 169 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 CCDC140Q96MF4 163 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 AP5M1Q9H0R1 490 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 PCDH18Q9HCL0 1135 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 ACTR10Q9NZ32 417 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS35-207ENST00000568191 EMC9Q9Y3B6 208 aa4.73□□□□□ -1.65
VPS35-207ENST00000568191 B8ZZF3 427 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 AGRPO00253 132 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 MYO1BO43795 1136 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 GLI4P10075 376 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 CEBPAP49715 358 aaPredicted RBP4.72□□□□□ -1.65
VPS35-207ENST00000568191 FXNQ16595 210 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 SV2CQ496J9 727 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 CPNE8Q86YQ8 564 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 TMEFF1Q8IYR6 380 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 TSPAN17Q96FV3 270 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 KCNC2Q96PR1 638 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.72□□□□□ -1.657e-6■■□□□ 11.5
VPS35-207ENST00000568191 LUC7LQ9NQ29 371 aaKnown RBP4.72□□□□□ -1.65
VPS35-207ENST00000568191 CYP26B1Q9NR63 512 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 RWDD3Q9Y3V2 267 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 PMF1-BGLAPU3KQ54 211 aa4.72□□□□□ -1.65
VPS35-207ENST00000568191 UNCXA6NJT0 531 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 DDAH1O94760 285 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 TCF3P15923 654 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 KCNC1P48547 511 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 GTF2A2P52657 109 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 FOXO4P98177 505 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 SCRN1Q12765 414 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 LARP1BQ659C4 914 aaKnown RBP4.71□□□□□ -1.66
VPS35-207ENST00000568191 DCP2Q8IU60 420 aaKnown RBP4.71□□□□□ -1.66
VPS35-207ENST00000568191 DDX11Q96FC9 970 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 MMP19Q99542 508 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 CLEC1BQ9P126 229 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 GULP1Q9UBP9 304 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 SUSD2Q9UGT4 822 aa4.71□□□□□ -1.66
VPS35-207ENST00000568191 C7orf72A4D263 438 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 PRRG2O14669 202 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 SMAD7O15105 426 aaKnown RBP4.7□□□□□ -1.66
VPS35-207ENST00000568191 TRIM13O60858 407 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 CPP00450 1065 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 FUCA1P04066 466 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 PLS3P13797 630 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 IGFBP6P24592 240 aaPredicted RBP4.7□□□□□ -1.66
VPS35-207ENST00000568191 HOXC12P31275 282 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 ARID5AQ03989 594 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 E4F1Q66K89 784 aaPredicted RBP4.7□□□□□ -1.66
VPS35-207ENST00000568191 WWC2Q6AWC2 1192 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 GTF2IRD2BQ6EKJ0 949 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 GTF2IRD2Q86UP8 949 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 TRIM59Q8IWR1 403 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 FAM178BQ8IXR5 827 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 FAM169BQ8N8A8 192 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 MCMBPQ9BTE3 642 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 APEX2Q9UBZ4 518 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 PRKAG3Q9UGI9 489 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 MRVI1Q9Y6F6 885 aa4.7□□□□□ -1.66
VPS35-207ENST00000568191 ASGR2P07307 311 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 SYN1P17600 705 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 LIMS1P48059 325 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms