RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 NFRKBQ6P4R8 1299 aa20.06■□□□□ 0.8
CDH3-205ENST00000566808 LRRC47Q8N1G4 583 aaKnown RBP20.06■□□□□ 0.8
CDH3-205ENST00000566808 MORC4Q8TE76 937 aa20.06■□□□□ 0.8
CDH3-205ENST00000566808 MTG1Q9BT17 334 aaPredicted RBP20.06■□□□□ 0.8
CDH3-205ENST00000566808 DDX49Q9Y6V7 483 aaKnown RBP20.06■□□□□ 0.8
CDH3-205ENST00000566808 PLIN4Q96Q06 1357 aa20.06■□□□□ 0.8
CDH3-205ENST00000566808 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.05■□□□□ 0.8
CDH3-205ENST00000566808 LCHNA4D1U4 455 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 TTLL1O95922 423 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 KCNA5P22460 613 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 WDR5P61964 334 aaKnown RBP20.05■□□□□ 0.8
CDH3-205ENST00000566808 LRRFIP1Q32MZ4 808 aaKnown RBP20.05■□□□□ 0.8
CDH3-205ENST00000566808 KIAA1211Q6ZU35 1233 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 FAM160B2Q86V87 743 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 KIF1BPQ96EK5 621 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 CEP95Q96GE4 821 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 TRERF1Q96PN7 1200 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 GPHNQ9NQX3 736 aaPredicted RBP20.05■□□□□ 0.8
CDH3-205ENST00000566808 MTMR4Q9NYA4 1195 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 CYP39A1Q9NYL5 469 aa20.05■□□□□ 0.8
CDH3-205ENST00000566808 MYL3P08590 195 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 ALAS1P13196 640 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 SLFN13Q68D06 897 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 GIMAP6Q6P9H5 292 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 FBXL18Q96ME1 805 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 ZNF287Q9HBT7 754 aa20.04■□□□□ 0.8
CDH3-205ENST00000566808 ISY1Q9ULR0 285 aaKnown RBP20.04■□□□□ 0.8
CDH3-205ENST00000566808 ZDBF2Q9HCK1 2354 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 RAD50Q92878 1312 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 TMEM232C9JQI7 657 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 DCXO43602 365 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 CHGBP05060 677 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 PTPN11Q06124 597 aaPredicted RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 IKQ13123 557 aaPredicted RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 NBPF20Q3BBV1 942 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 BRDTQ58F21 947 aaPredicted RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 PTCRAQ6ISU1 281 aaPredicted RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 ZSCAN25Q6NSZ9 544 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 CHURC1Q8WUH1 139 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 HAUS7Q99871 368 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 ZBED2Q9BTP6 218 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 PUS7LQ9H0K6 701 aaKnown RBP20.03■□□□□ 0.8
CDH3-205ENST00000566808 BOLA2Q9H3K6 86 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 SUGCTQ9HAC7 445 aa20.03■□□□□ 0.8
CDH3-205ENST00000566808 LOC102724159A0A0B4J2E5 919 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 IL9P15248 144 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 ATP5JP18859 108 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 ERVK-21P61565 698 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 PWP2Q15269 919 aaKnown RBP20.02■□□□□ 0.8
CDH3-205ENST00000566808 PUS10Q3MIT2 529 aaKnown RBP20.02■□□□□ 0.8
CDH3-205ENST00000566808 STK11IPQ8N1F8 1099 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 CCDC155Q8N6L0 562 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 OR6J1Q8NGC5 347 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 GMCL1Q96IK5 515 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 TGS1Q96RS0 853 aaKnown RBP20.02■□□□□ 0.8
CDH3-205ENST00000566808 WDR11Q9BZH6 1224 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 NOD1Q9Y239 953 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 CFAP54Q96N23 3096 aa20.02■□□□□ 0.8
CDH3-205ENST00000566808 USP34Q70CQ2 3546 aa20.02■□□□□ 0.79
CDH3-205ENST00000566808 MINDY4BA8MYZ0 360 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 RLBP1P12271 317 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 MUM1L1Q5H9M0 696 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 ZNF444Q8N0Y2 327 aaPredicted RBP20.01■□□□□ 0.79
CDH3-205ENST00000566808 CAGE1Q8TC20 777 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 AFAP1L1Q8TED9 768 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 ADD3Q9UEY8 706 aaKnown RBP20.01■□□□□ 0.79
CDH3-205ENST00000566808 MTUS1Q9ULD2 1270 aa20.01■□□□□ 0.79
CDH3-205ENST00000566808 C5orf42Q9H799 3197 aa20■□□□□ 0.79
CDH3-205ENST00000566808 GRXCR2A6NFK2 248 aa20■□□□□ 0.79
CDH3-205ENST00000566808 KPNA6O60684 536 aa20■□□□□ 0.79
CDH3-205ENST00000566808 NSMFQ6X4W1 530 aa20■□□□□ 0.79
CDH3-205ENST00000566808 STAG1Q8WVM7 1258 aa20■□□□□ 0.79
CDH3-205ENST00000566808 STRBPQ96SI9 672 aaKnown RBP20■□□□□ 0.79
CDH3-205ENST00000566808 RAD9AQ99638 391 aa20■□□□□ 0.79
CDH3-205ENST00000566808 MICAL3Q7RTP6 2002 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 RBM47A0AV96 593 aaKnown RBP19.99■□□□□ 0.79
CDH3-205ENST00000566808 GSG1L2A8MUP6 293 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 PLA2G6O60733 806 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 GJB5O95377 273 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 SLC1A4P43007 532 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 ALDH5A1P51649 535 aaPredicted RBP19.99■□□□□ 0.79
CDH3-205ENST00000566808 DEFB103AP81534 67 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 CNKSR3Q6P9H4 555 aa19.99■□□□□ 0.79
CDH3-205ENST00000566808 TMCO2Q7Z6W1 182 aaPredicted RBP19.99■□□□□ 0.79
CDH3-205ENST00000566808 POTEB3A0JP26 581 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 LINC01553A4QN01 128 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 NKRFO15226 690 aaKnown RBP eCLIP19.98■□□□□ 0.79
CDH3-205ENST00000566808 PRDM1O75626 825 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 PARNO95453 639 aaKnown RBP19.98■□□□□ 0.79
CDH3-205ENST00000566808 PPP2R5BQ15173 497 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 POTEBQ6S5H4 581 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 CCPG1Q9ULG6 757 aa19.98■□□□□ 0.79
CDH3-205ENST00000566808 A6NJR5 290 aa19.97■□□□□ 0.79
CDH3-205ENST00000566808 EFCAB14O75071 495 aa19.97■□□□□ 0.79
CDH3-205ENST00000566808 LRRC8DQ7L1W4 858 aa19.97■□□□□ 0.79
CDH3-205ENST00000566808 NEK9Q8TD19 979 aa19.97■□□□□ 0.79
CDH3-205ENST00000566808 PPP1R13LQ8WUF5 828 aa19.97■□□□□ 0.79
CDH3-205ENST00000566808 PURBQ96QR8 312 aaKnown RBP19.97■□□□□ 0.79
CDH3-205ENST00000566808 EPB41L4AQ9HCS5 686 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms