RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RANBP17Q9H2T7 1088 aaKnown RBP20.03■□□□□ 0.8
CLN3-217ENST00000565354 CPVLQ9H3G5 476 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 ZSWIM6Q9HCJ5 1215 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 VAT1LQ9HCJ6 419 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 SLC5A4Q9NY91 659 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 MAD2L2Q9UI95 211 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 CCPG1Q9ULG6 757 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 TMEM265A0A087WTH1 108 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 PALM3A6NDB9 673 aaPredicted RBP20.02■□□□□ 0.8
CLN3-217ENST00000565354 ATP2A1O14983 1001 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 ZBTB43O43298 467 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 ALAS1P13196 640 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 RXRAP19793 462 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 GNAQP50148 359 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 TLE2Q04725 743 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 PRAMEF19Q5SWL8 479 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 CCDC144CPQ8IYA2 1237 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 ADGRF4Q8IZF3 695 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 BRF1Q92994 677 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 MAP3K14Q99558 947 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 HOMER2Q9NSB8 354 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 PNMA2Q9UL42 364 aa20.02■□□□□ 0.8
CLN3-217ENST00000565354 FCER1AP12319 257 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 APOBRQ0VD83 1088 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 KCTD2Q14681 263 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 CDC37Q16543 378 aaPredicted RBP20.01■□□□□ 0.79
CLN3-217ENST00000565354 TKFCQ3LXA3 575 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 ABRAQ8N0Z2 381 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 RNPC3Q96LT9 517 aaKnown RBP20.01■□□□□ 0.79
CLN3-217ENST00000565354 AGBL1Q96MI9 1066 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 MMP19Q99542 508 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 PDRG1Q9NUG6 133 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 FBXO40Q9UH90 709 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 MYO9BQ13459 2157 aa20.01■□□□□ 0.79
CLN3-217ENST00000565354 NCOR1O75376 2440 aa20■□□□□ 0.79
CLN3-217ENST00000565354 GOLGA8AA7E2F4 631 aa20■□□□□ 0.79
CLN3-217ENST00000565354 GOLGA8BA8MQT2 603 aa20■□□□□ 0.79
CLN3-217ENST00000565354 ICAM1P05362 532 aa20■□□□□ 0.79
CLN3-217ENST00000565354 ITGB8P26012 769 aa20■□□□□ 0.79
CLN3-217ENST00000565354 APOA5Q6Q788 366 aa20■□□□□ 0.79
CLN3-217ENST00000565354 CHST13Q8NET6 341 aa20■□□□□ 0.79
CLN3-217ENST00000565354 MAML3Q96JK9 1138 aa20■□□□□ 0.79
CLN3-217ENST00000565354 LZTS2Q9BRK4 669 aa20■□□□□ 0.79
CLN3-217ENST00000565354 RNF146Q9NTX7 359 aa20■□□□□ 0.79
CLN3-217ENST00000565354 PHF24Q9UPV7 400 aa20■□□□□ 0.79
CLN3-217ENST00000565354 PLXNA1Q9UIW2 1896 aa20■□□□□ 0.79
CLN3-217ENST00000565354 CLTBP09497 229 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 RTN1Q16799 776 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 HOMER1Q86YM7 354 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 FANCBQ8NB91 859 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 TRERF1Q96PN7 1200 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 C22orf23Q9BZE7 217 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 ACAD9Q9H845 621 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 RBM28Q9NW13 759 aaKnown RBP19.99■□□□□ 0.79
CLN3-217ENST00000565354 BRPF3Q9ULD4 1205 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 RIPK3Q9Y572 518 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 ZNF536O15090 1300 aa19.99■□□□□ 0.79
CLN3-217ENST00000565354 METAP2P50579 478 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-217ENST00000565354 EPHB4P54760 987 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 USH1GQ495M9 461 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 ANKRD35Q8N283 1001 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 DDX11Q96FC9 970 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 JMJD4Q9H9V9 463 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 XPNPEP3Q9NQH7 507 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 NRBP1Q9UHY1 535 aa19.98■□□□□ 0.79
CLN3-217ENST00000565354 KIAA0355O15063 1070 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 RARBP10826 455 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 QRICH1Q2TAL8 776 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 FBXO11Q86XK2 927 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 FBXL16Q8N461 479 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 PIBF1Q8WXW3 757 aa19.97■□□□□ 0.79
CLN3-217ENST00000565354 ZBTB5O15062 677 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 RAG1P15918 1043 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 RCAN1P53805 252 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 GRIN2CQ14957 1233 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 TJAP1Q5JTD0 557 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 RNF180Q86T96 592 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 RRP36Q96EU6 259 aaKnown RBP19.96■□□□□ 0.79
CLN3-217ENST00000565354 PIGSQ96S52 555 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 RIOX1Q9H6W3 641 aa19.96■□□□□ 0.79
CLN3-217ENST00000565354 SEC63Q9UGP8 760 aaKnown RBP19.96■□□□□ 0.79
CLN3-217ENST00000565354 CCDC196A0A1B0GTZ2 297 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 PLEKHA8P1O95397 391 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 TAL1P17542 331 aaPredicted RBP19.95■□□□□ 0.78
CLN3-217ENST00000565354 FPGSQ05932 587 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 TRAF1Q13077 416 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 ANKRD1Q15327 319 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 NSMFQ6X4W1 530 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 CCDC82Q8N4S0 544 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 USP38Q8NB14 1042 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 SPZ1Q9BXG8 430 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 AMNQ9BXJ7 453 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 AGXT2Q9BYV1 514 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 ABCB11O95342 1321 aa19.95■□□□□ 0.78
CLN3-217ENST00000565354 A0A1W2PQ45 241 aaPredicted RBP19.94■□□□□ 0.78
CLN3-217ENST00000565354 A0A1W2PQY0 241 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 PQBP1O60828 265 aaKnown RBP19.94■□□□□ 0.78
CLN3-217ENST00000565354 PGK1P00558 417 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 DNAJB2P25686 324 aa19.94■□□□□ 0.78
CLN3-217ENST00000565354 SMARCA1P28370 1054 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms