RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HSD17B4P51659 736 aa23.67■■□□□ 1.38
CLN3-212ENST00000564574 SP3Q02447 781 aa23.67■■□□□ 1.38
CLN3-212ENST00000564574 BLIDQ8IZY5 108 aa23.67■■□□□ 1.38
CLN3-212ENST00000564574 ABRAQ8N0Z2 381 aa23.67■■□□□ 1.38
CLN3-212ENST00000564574 STX6O43752 255 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 CFBP00751 764 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 KRT2P35908 639 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 GUCY1B3Q02153 619 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 KCTD2Q14681 263 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 NPY5RQ15761 445 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 WDR78Q5VTH9 848 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 NSMFQ6X4W1 530 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 RNF207Q6ZRF8 634 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 PLEKHH3Q7Z736 793 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 ANKRD35Q8N283 1001 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 MMP19Q99542 508 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 A1CFQ9NQ94 594 aaKnown RBP23.66■■□□□ 1.38
CLN3-212ENST00000564574 IVNS1ABPQ9Y6Y0 642 aa23.66■■□□□ 1.38
CLN3-212ENST00000564574 GPR25O00155 361 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 MEIS2O14770 477 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 FCER1AP12319 257 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 CTCFP49711 727 aaPredicted RBP23.65■■□□□ 1.38
CLN3-212ENST00000564574 CLK2P49760 499 aaKnown RBP23.65■■□□□ 1.38
CLN3-212ENST00000564574 KIF22Q14807 665 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 GPR142Q7Z601 462 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 REXO1Q8N1G1 1221 aaKnown RBP23.65■■□□□ 1.38
CLN3-212ENST00000564574 CYP39A1Q9NYL5 469 aa23.65■■□□□ 1.38
CLN3-212ENST00000564574 VPS37CA5D8V6 355 aaPredicted RBP23.64■■□□□ 1.37
CLN3-212ENST00000564574 CAPN15O75808 1086 aa23.64■■□□□ 1.37
CLN3-212ENST00000564574 FOSP01100 380 aaPredicted RBP23.64■■□□□ 1.37
CLN3-212ENST00000564574 LACTBP83111 547 aaPredicted RBP23.64■■□□□ 1.37
CLN3-212ENST00000564574 AP3B2Q13367 1082 aa23.64■■□□□ 1.37
CLN3-212ENST00000564574 DIS3L2Q8IYB7 885 aaKnown RBP23.64■■□□□ 1.37
CLN3-212ENST00000564574 LCTP09848 1927 aa23.64■■□□□ 1.37
CLN3-212ENST00000564574 PLXNA1Q9UIW2 1896 aa23.64■■□□□ 1.37
CLN3-212ENST00000564574 SLC15A5A6NIM6 579 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 PTPREP23469 700 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 DDIT3P35638 169 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 FCGRTP55899 365 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 RPS6P62753 249 aaKnown RBP23.63■■□□□ 1.37
CLN3-212ENST00000564574 BAATQ14032 418 aaPredicted RBP23.63■■□□□ 1.37
CLN3-212ENST00000564574 USP17L6PQ6QN14 398 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 TBC1D5Q92609 795 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 FOXP1Q9H334 677 aaPredicted RBP23.63■■□□□ 1.37
CLN3-212ENST00000564574 PRDM10Q9NQV6 1147 aa23.63■■□□□ 1.37
CLN3-212ENST00000564574 DOCK3Q8IZD9 2030 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 M0R2N6 131 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 FKTNO75072 461 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 GNL2Q13823 731 aaKnown RBP23.62■■□□□ 1.37
CLN3-212ENST00000564574 GRB14Q14449 540 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 UBE2SQ16763 222 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 SLC30A10Q6XR72 485 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 SYTL5Q8TDW5 730 aaPredicted RBP23.62■■□□□ 1.37
CLN3-212ENST00000564574 ERO1AQ96HE7 468 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 BIN2Q9UBW5 565 aaPredicted RBP23.62■■□□□ 1.37
CLN3-212ENST00000564574 CIZ1Q9ULV3 898 aaPredicted RBP23.62■■□□□ 1.37
CLN3-212ENST00000564574 PCDHA6Q9UN73 950 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 MTMR6Q9Y217 621 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 PCDHA8Q9Y5H6 950 aa23.62■■□□□ 1.37
CLN3-212ENST00000564574 SPDYE3A6NKU9 549 aa23.61■■□□□ 1.37
CLN3-212ENST00000564574 BTBD18B2RXH4 712 aa23.61■■□□□ 1.37
CLN3-212ENST00000564574 TNPO2O14787 897 aaKnown RBP23.61■■□□□ 1.37
CLN3-212ENST00000564574 HOXA13P31271 388 aaPredicted RBP23.61■■□□□ 1.37
CLN3-212ENST00000564574 KRT25Q7Z3Z0 450 aa23.61■■□□□ 1.37
CLN3-212ENST00000564574 EHMT1Q9H9B1 1298 aa23.61■■□□□ 1.37
CLN3-212ENST00000564574 ZSWIM8A7E2V4 1837 aa23.61■■□□□ 1.37
CLN3-212ENST00000564574 POTEB2H3BUK9 544 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 U2AF2P26368 475 aaKnown RBP eCLIP23.6■■□□□ 1.37
CLN3-212ENST00000564574 PSMC4P43686 418 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 NUCB2P80303 420 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 ARHGEF6Q15052 776 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 MCTP1Q6DN14 999 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 OXER1Q8TDS5 423 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 SOCS4Q8WXH5 440 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 TNFRSF25Q93038 417 aa23.6■■□□□ 1.37
CLN3-212ENST00000564574 DNAJC25-GNG10A0A024R161 153 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 GNRH1P01148 92 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 ADORA2AP29274 412 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 MORN1Q5T089 497 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 JAKMIP3Q5VZ66 844 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 FAM133AQ8N9E0 248 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 DNERQ8NFT8 737 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 ANO3Q9BYT9 981 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 SLC5A4Q9NY91 659 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 MYH7BA7E2Y1 1941 aa23.59■■□□□ 1.37
CLN3-212ENST00000564574 CASP8AP2Q9UKL3 1982 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 LOC102724159A0A0B4J2E5 919 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 CCDC194A0A1B0GVG4 234 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 ADAMTS3O15072 1205 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 ZSCAN22P10073 491 aaPredicted RBP23.58■■□□□ 1.37
CLN3-212ENST00000564574 LBX1P52954 281 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 NR5A1Q13285 461 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 PWP2Q15269 919 aaKnown RBP23.58■■□□□ 1.37
CLN3-212ENST00000564574 FCHSD1Q86WN1 690 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 NOSTRINQ8IVI9 506 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 RASGRP4Q8TDF6 673 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 ZNF296Q8WUU4 475 aaPredicted RBP23.58■■□□□ 1.37
CLN3-212ENST00000564574 NUDT12Q9BQG2 462 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 ZSCAN16Q9H4T2 348 aaPredicted RBP23.58■■□□□ 1.37
CLN3-212ENST00000564574 TMEM260Q9NX78 707 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms