RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 GJA9P57773 515 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 MDM2Q00987 491 aaPredicted RBP18.22■□□□□ 0.51
VPS39-203ENST00000561797 BEX3Q00994 111 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 TROAPQ12815 778 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 COL9A3Q14050 684 aaPredicted RBP18.22■□□□□ 0.51
VPS39-203ENST00000561797 SNX17Q15036 470 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 GNASQ5JWF2 1037 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 TMEM63BQ5T3F8 832 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 IQSEC1Q6DN90 963 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 HOMER1Q86YM7 354 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 PCSK9Q8NBP7 692 aaKnown RBP18.22■□□□□ 0.51
VPS39-203ENST00000561797 RGS22Q8NE09 1264 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 MYL10Q9BUA6 226 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 AMNQ9BXJ7 453 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 LY9Q9HBG7 655 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 VTA1Q9NP79 307 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 PRKAG2Q9UGJ0 569 aa18.22■□□□□ 0.51
VPS39-203ENST00000561797 MRPL11Q9Y3B7 192 aaKnown RBP18.22■□□□□ 0.51
VPS39-203ENST00000561797 MOXD2PA6NHM9 499 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 DYNC1LI2O43237 492 aaPredicted RBP18.21■□□□□ 0.51
VPS39-203ENST00000561797 SLC34A2O95436 690 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 ASGR1P07306 291 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 FXR1P51114 621 aaKnown RBP eCLIP18.21■□□□□ 0.51
VPS39-203ENST00000561797 PDE4DQ08499 809 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 SLC35G1Q2M3R5 365 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 RNF20Q5VTR2 975 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 CCSAPQ6IQ19 270 aaPredicted RBP18.21■□□□□ 0.51
VPS39-203ENST00000561797 NFXL1Q6ZNB6 911 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 TLK2Q86UE8 772 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 MCF2L2Q86YR7 1114 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 ZNF654Q8IZM8 581 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 DNERQ8NFT8 737 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 VTI1AQ96AJ9 217 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 TAAR1Q96RJ0 339 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 PIGSQ96S52 555 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 MPHOSPH6Q99547 160 aaKnown RBP18.21■□□□□ 0.51
VPS39-203ENST00000561797 AP5M1Q9H0R1 490 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 PRDM5Q9NQX1 630 aaPredicted RBP18.21■□□□□ 0.51
VPS39-203ENST00000561797 STARD7Q9NQZ5 370 aa18.21■□□□□ 0.51
VPS39-203ENST00000561797 GNEQ9Y223 722 aaKnown RBP18.21■□□□□ 0.51
VPS39-203ENST00000561797 LOC102724159A0A0B4J2E5 919 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 ZBTB5O15062 677 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 PPP1R11O60927 126 aaPredicted RBP18.2■□□□□ 0.5
VPS39-203ENST00000561797 CST5P28325 142 aaPredicted RBP18.2■□□□□ 0.5
VPS39-203ENST00000561797 TLE2Q04725 743 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 PWP2Q15269 919 aaKnown RBP18.2■□□□□ 0.5
VPS39-203ENST00000561797 PIBF1Q8WXW3 757 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 MTMR8Q96EF0 704 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 TMEM87BQ96K49 555 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 LRRC2Q9BYS8 371 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 UBE2OQ9C0C9 1292 aaKnown RBP18.2■□□□□ 0.5
VPS39-203ENST00000561797 RIOX1Q9H6W3 641 aa18.2■□□□□ 0.5
VPS39-203ENST00000561797 CCDC69A6NI79 296 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 B4DLN1 442 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 SH2B2O14492 632 aaPredicted RBP18.19■□□□□ 0.5
VPS39-203ENST00000561797 CTAGE5O15320 804 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 CYTH3O43739 400 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 CFBP00751 764 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 BMP8BP34820 402 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 MRPL12P52815 198 aaKnown RBP18.19■□□□□ 0.5
VPS39-203ENST00000561797 C1orf53Q5VUE5 145 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 SYTL5Q8TDW5 730 aaPredicted RBP18.19■□□□□ 0.5
VPS39-203ENST00000561797 GLT1D1Q96MS3 346 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 LBHD1Q9BQE6 289 aaPredicted RBP18.19■□□□□ 0.5
VPS39-203ENST00000561797 MTA3Q9BTC8 594 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 WDR11Q9BZH6 1224 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 COL20A1Q9P218 1284 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 PCDHA1Q9Y5I3 950 aa18.19■□□□□ 0.5
VPS39-203ENST00000561797 DNAH12Q6ZR08 3092 aa18.18■□□□□ 0.5
VPS39-203ENST00000561797 PQBP1O60828 265 aaKnown RBP18.18■□□□□ 0.5
VPS39-203ENST00000561797 SH3RF1Q7Z6J0 888 aa18.18■□□□□ 0.5
VPS39-203ENST00000561797 TMTC2Q8N394 836 aa18.18■□□□□ 0.5
VPS39-203ENST00000561797 CTCFLQ8NI51 663 aaPredicted RBP18.18■□□□□ 0.5
VPS39-203ENST00000561797 OPLAHO14841 1288 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 DDAH1O94760 285 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 RXRAP19793 462 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 EDNRBP24530 442 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 FSCN1Q16658 493 aaKnown RBP18.17■□□□□ 0.5
VPS39-203ENST00000561797 DUSP28Q4G0W2 176 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 RAB11FIP4Q86YS3 637 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 RASEFQ8IZ41 740 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 NSUN6Q8TEA1 469 aaKnown RBP18.17■□□□□ 0.5
VPS39-203ENST00000561797 NEK1Q96PY6 1258 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 RMDN3Q96TC7 470 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 MAF1Q9H063 256 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 PDLIM7Q9NR12 457 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 Q9Y3F1 56 aa18.17■□□□□ 0.5
VPS39-203ENST00000561797 PNMA6FA0A0J9YX94 578 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 A0A1W2PPC1 479 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 RBM47A0AV96 593 aaKnown RBP18.16■□□□□ 0.5
VPS39-203ENST00000561797 CLTBP09497 229 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 EIF2AK2P19525 551 aaKnown RBP18.16■□□□□ 0.5
VPS39-203ENST00000561797 KIF5BP33176 963 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 LIFRP42702 1097 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 NKX3-2P78367 333 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 ARHGEF16Q5VV41 709 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 CXCL17Q6UXB2 119 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 TCEANC2Q96MN5 208 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 MAP3K14Q99558 947 aa18.16■□□□□ 0.5
VPS39-203ENST00000561797 ELP1O95163 1332 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms