RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 DUSP28Q4G0W2 176 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 PPP4R3BQ5MIZ7 849 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 KRT40Q6A162 431 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 APPBP2Q92624 585 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 GMCL1Q96IK5 515 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 ADD3Q9UEY8 706 aaKnown RBP21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 DDX19BQ9UMR2 479 aa21.16■□□□□ 0.98
TSPAN3-208ENST00000560514 RAD50Q92878 1312 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 GPAA1O43292 621 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 MCCP23508 829 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 TAP1Q03518 808 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 NEDD1Q8NHV4 660 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 VWCEQ96DN2 955 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 MTG1Q9BT17 334 aaPredicted RBP21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 WDR11Q9BZH6 1224 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 NACAP1Q9BZK3 213 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 CCPG1Q9ULG6 757 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 NOD1Q9Y239 953 aa21.15■□□□□ 0.98
TSPAN3-208ENST00000560514 TRANK1O15050 2925 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 EPOPA6NHQ4 379 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 KCNJ6P48051 423 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 HNRNPUQ00839 825 aaKnown RBP eCLIP21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 TFAP4Q01664 338 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 BFSP2Q13515 415 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 MUM1L1Q5H9M0 696 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 HERC6Q8IVU3 1022 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 SIRT2Q8IXJ6 389 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 OR6J1Q8NGC5 347 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 OSBP2Q969R2 916 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 LRRCC1Q9C099 1032 aa21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 CHMP4BQ9H444 224 aaKnown RBP21.14■□□□□ 0.97
TSPAN3-208ENST00000560514 PLIN4Q96Q06 1357 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 RNF113AO15541 343 aaKnown RBP21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 PLA2G6O60733 806 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 GPR37L1O60883 481 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 ZFYP08048 801 aaPredicted RBP21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 PURAQ00577 322 aaKnown RBP21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 TMEM63BQ5T3F8 832 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 KCTD1Q719H9 257 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 KBTBD3Q8NAB2 608 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 EPB41L4AQ9HCS5 686 aaPredicted RBP21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 ECHDC1Q9NTX5 307 aa21.13■□□□□ 0.97
TSPAN3-208ENST00000560514 PATL2C9JE40 543 aaKnown RBP21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 PITPNM1O00562 1244 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 IQCF3P0C7M6 154 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 SNAP25P60880 206 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 GRB10Q13322 594 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 LRRFIP1Q32MZ4 808 aaKnown RBP21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 NBPF20Q3BBV1 942 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 RCSD1Q6JBY9 416 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 GPATCH3Q96I76 525 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 MPHOSPH6Q99547 160 aaKnown RBP21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 PRR12Q9ULL5 1215 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 STX8Q9UNK0 236 aa21.12■□□□□ 0.97
TSPAN3-208ENST00000560514 FAM86C2PA6NEL3 165 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 BAIAP3O94812 1187 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 ALDH5A1P51649 535 aaPredicted RBP21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 NFRKBQ6P4R8 1299 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 IFNL3Q8IZI9 196 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 MORC4Q8TE76 937 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 ZBED2Q9BTP6 218 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 ZBTB40Q9NUA8 1239 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 MTMR7Q9Y216 660 aa21.11■□□□□ 0.97
TSPAN3-208ENST00000560514 TANC1Q9C0D5 1861 aa21.1■□□□□ 0.97
TSPAN3-208ENST00000560514 KPNA6O60684 536 aa21.1■□□□□ 0.97
TSPAN3-208ENST00000560514 CCDC155Q8N6L0 562 aa21.1■□□□□ 0.97
TSPAN3-208ENST00000560514 PURBQ96QR8 312 aaKnown RBP21.1■□□□□ 0.97
TSPAN3-208ENST00000560514 LOC102724159A0A0B4J2E5 919 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 PTPDC1A2A3K4 754 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 TSPY2A6NKD2 308 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 NKRFO15226 690 aaKnown RBP eCLIP21.09■□□□□ 0.972e-6■□□□□ 8.4
TSPAN3-208ENST00000560514 SMARCA5O60264 1052 aaPredicted RBP21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 ICAM1P05362 532 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 CHMP4BP1P59074 171 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 PTPN11Q06124 597 aaPredicted RBP21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 BAATQ14032 418 aaPredicted RBP21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 PPP2R5BQ15173 497 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 PWP2Q15269 919 aaKnown RBP21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 CCDC96Q2M329 555 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 NAPBQ9H115 298 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 LMCD1Q9NZU5 365 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 LCTP09848 1927 aa21.09■□□□□ 0.97
TSPAN3-208ENST00000560514 TRIP12Q14669 1992 aaPredicted RBP21.08■□□□□ 0.97
TSPAN3-208ENST00000560514 SCN10AQ9Y5Y9 1956 aa21.08■□□□□ 0.97
TSPAN3-208ENST00000560514 M0R2C6 588 aa21.08■□□□□ 0.97
TSPAN3-208ENST00000560514 ARHGEF15O94989 841 aa21.08■□□□□ 0.97
TSPAN3-208ENST00000560514 PPARAQ07869 468 aa21.08■□□□□ 0.97
TSPAN3-208ENST00000560514 TET1Q8NFU7 2136 aa21.07■□□□□ 0.96
TSPAN3-208ENST00000560514 PI4K2BG5E9Z4 385 aa21.07■□□□□ 0.96
TSPAN3-208ENST00000560514 PDE4DQ08499 809 aa21.07■□□□□ 0.96
TSPAN3-208ENST00000560514 COL4A4P53420 1690 aaPredicted RBP21.07■□□□□ 0.96
TSPAN3-208ENST00000560514 RBM47A0AV96 593 aaKnown RBP21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 CALML3P27482 149 aa21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 GDPD5Q8WTR4 605 aa21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 SCFD2Q8WU76 684 aa21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 PPP1R13LQ8WUF5 828 aa21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 KHSRPQ92945 711 aaKnown RBP eCLIP21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 CRBNQ96SW2 442 aa21.06■□□□□ 0.96
TSPAN3-208ENST00000560514 B4DLN1 442 aa21.05■□□□□ 0.96
TSPAN3-208ENST00000560514 LPXNO60711 386 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms