RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PPP4CP60510 307 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 FAM196AQ6ZSG2 479 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 KCNK18Q7Z418 384 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 KIAA1328Q86T90 577 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 GSPT2Q8IYD1 628 aaKnown RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 DRC1Q96MC2 740 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 VPS18Q9P253 973 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 A0A1W2PQC6 194 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 MYMKA6NI61 221 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 PDE2AO00408 941 aaPredicted RBP14.4□□□□□ -0.1
LDLR-207ENST00000558013 CCNE1P24864 410 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 DNM2P50570 870 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 RHBDL3P58872 404 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 MFSD14BQ5SR56 506 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 TRAPPC11Q7Z392 1133 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 CNBD1Q8NA66 436 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 BLOC1S4Q9NUP1 217 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 ROBO3Q96MS0 1386 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 GRB10Q13322 594 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 WHAMMP3Q1A5X7 153 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 TMED8Q6PL24 325 aaPredicted RBP14.4□□□□□ -0.1
LDLR-207ENST00000558013 C16orf86Q6ZW13 317 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 ZNF804AQ7Z570 1209 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 RRP36Q96EU6 259 aaKnown RBP14.4□□□□□ -0.1
LDLR-207ENST00000558013 ZFP91Q96JP5 570 aaPredicted RBP14.4□□□□□ -0.1
LDLR-207ENST00000558013 PSMB7Q99436 277 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 GPCPD1Q9NPB8 672 aa14.4□□□□□ -0.1
LDLR-207ENST00000558013 PRPHP41219 470 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 LMAN1P49257 510 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 CASP8Q14790 479 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 TSR1Q2NL82 804 aaKnown RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 JAKMIP2Q96AA8 810 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 DHTKD1Q96HY7 919 aaPredicted RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 SPZ1Q9BXG8 430 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 KANSL2Q9H9L4 492 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 C6orf50Q9HD87 102 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 CCDC88AQ3V6T2 1871 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 IDEP14735 1019 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 UBE2SQ16763 222 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 RC3H1Q5TC82 1133 aaKnown RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 REXO1Q8N1G1 1221 aaKnown RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 NEDD1Q8NHV4 660 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 PNMA5Q96PV4 448 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 MXD3Q9BW11 206 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 HAUS4Q9H6D7 363 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 SEC63Q9UGP8 760 aaKnown RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 FAN1Q9Y2M0 1017 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 LEMD3Q9Y2U8 911 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 AHDC1Q5TGY3 1603 aaPredicted RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 PSMD14O00487 310 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 GSTO1P78417 241 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 ECM1Q16610 540 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 MEA1Q16626 185 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 SOGA3Q5TF21 947 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 PRR5LQ6MZQ0 368 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 HDXQ7Z353 690 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 KRT25Q7Z3Z0 450 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 HNRNPLLQ8WVV9 542 aaKnown RBP14.39□□□□□ -0.11
LDLR-207ENST00000558013 SMARCAL1Q9NZC9 954 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 LRWD1Q9UFC0 647 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 POLLQ9UGP5 575 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 SAR1BQ9Y6B6 198 aa14.39□□□□□ -0.11
LDLR-207ENST00000558013 SLC16A2P36021 539 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 GALNT17Q6IS24 598 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 ANKRD13CQ8N6S4 541 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 C7orf25Q9BPX7 421 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 MYO1AQ9UBC5 1043 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 GPR75-ASB3A0A0A6YYF3 556 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 MYBL2P10244 700 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 APBA1Q02410 837 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 TRAPPC3LQ5T215 181 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 TTBK2Q6IQ55 1244 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 MLXIPQ9HAP2 919 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 LRRC4BQ9NT99 713 aa14.38□□□□□ -0.11
LDLR-207ENST00000558013 LAD1O00515 517 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 RIMBP2O15034 1052 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 PDHBP11177 359 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 C2CD5Q86YS7 1000 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 RIN2Q8WYP3 895 aaPredicted RBP14.37□□□□□ -0.11
LDLR-207ENST00000558013 CCDC102AQ96A19 550 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 CCDC66A2RUB6 948 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 LDHCP07864 332 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 AKR1B1P15121 316 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 GNA11P29992 359 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 TNNI2P48788 182 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 CALCRLQ16602 461 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 MTMR9Q96QG7 549 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 FGFBP2Q9BYJ0 223 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 MMRN2Q9H8L6 949 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 JADE2Q9NQC1 790 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 EHD2Q9NZN4 543 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 TBC1D7Q9P0N9 293 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 ARHGAP20Q9P2F6 1191 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 CAPN6Q9Y6Q1 641 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 PPP1R11O60927 126 aaPredicted RBP14.37□□□□□ -0.11
LDLR-207ENST00000558013 CXCR5P32302 372 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 ZBED6P86452 979 aa14.37□□□□□ -0.11
LDLR-207ENST00000558013 RPGRQ92834 1020 aaKnown RBP14.37□□□□□ -0.11
LDLR-207ENST00000558013 AK8Q96MA6 479 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms