RNA–Protein interactions for RNA: ENST00000557916.5

SMAD6-202, Transcript of SMAD family member 6, humanhuman

TSL 1 (best)

Gene SMAD6, Length 1,401 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-202ENST00000557916 RBM27Q9P2N5 1060 aaKnown RBP29.49■■■□□ 2.31
SMAD6-202ENST00000557916 CFBP00751 764 aa29.48■■■□□ 2.31
SMAD6-202ENST00000557916 TRIM32Q13049 653 aa29.48■■■□□ 2.31
SMAD6-202ENST00000557916 NECAB1Q8N987 351 aa29.48■■■□□ 2.31
SMAD6-202ENST00000557916 GPKOWQ92917 476 aaPredicted RBP eCLIP29.48■■■□□ 2.31
SMAD6-202ENST00000557916 SOWAHBA6NEL2 793 aa29.47■■■□□ 2.31
SMAD6-202ENST00000557916 IGHA2P01877 340 aa29.47■■■□□ 2.31
SMAD6-202ENST00000557916 ZNF467Q7Z7K2 595 aaPredicted RBP29.47■■■□□ 2.31
SMAD6-202ENST00000557916 FGD4Q96M96 766 aa29.47■■■□□ 2.31
SMAD6-202ENST00000557916 PURBQ96QR8 312 aaKnown RBP29.47■■■□□ 2.31
SMAD6-202ENST00000557916 TINF2Q9BSI4 451 aa29.47■■■□□ 2.31
SMAD6-202ENST00000557916 CYP2C19P33261 490 aa29.46■■■□□ 2.31
SMAD6-202ENST00000557916 SSRP1Q08945 709 aaKnown RBP29.46■■■□□ 2.31
SMAD6-202ENST00000557916 PFKFB3Q16875 520 aaPredicted RBP29.46■■■□□ 2.31
SMAD6-202ENST00000557916 WWC2Q6AWC2 1192 aa29.46■■■□□ 2.31
SMAD6-202ENST00000557916 TRIM22Q8IYM9 498 aa29.46■■■□□ 2.31
SMAD6-202ENST00000557916 GTF3C6Q969F1 213 aa29.46■■■□□ 2.31
SMAD6-202ENST00000557916 CDKL5O76039 1030 aa29.45■■■□□ 2.31
SMAD6-202ENST00000557916 MYCP01106 439 aaPredicted RBP29.45■■■□□ 2.31
SMAD6-202ENST00000557916 SAMD3Q8N6K7 520 aa29.45■■■□□ 2.31
SMAD6-202ENST00000557916 SYTL5Q8TDW5 730 aaPredicted RBP29.45■■■□□ 2.31
SMAD6-202ENST00000557916 ZSCAN31Q96LW9 406 aaPredicted RBP29.45■■■□□ 2.31
SMAD6-202ENST00000557916 PLXNA1Q9UIW2 1896 aa29.45■■■□□ 2.31
SMAD6-202ENST00000557916 hCG_1984214I3L0E3 225 aa29.45■■■□□ 2.3
SMAD6-202ENST00000557916 SCG2P13521 617 aa29.45■■■□□ 2.3
SMAD6-202ENST00000557916 PRKAR2AP13861 404 aaKnown RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 HSD17B4P51659 736 aa29.45■■■□□ 2.3
SMAD6-202ENST00000557916 GHRHRQ02643 423 aa29.45■■■□□ 2.3
SMAD6-202ENST00000557916 CACNB2Q08289 660 aaPredicted RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 PKN1Q16512 942 aa29.45■■■□□ 2.3
SMAD6-202ENST00000557916 MSL3Q8N5Y2 521 aaKnown RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 ZNF713Q8N859 430 aaPredicted RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 MAP3K20Q9NYL2 800 aaKnown RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 ADD3Q9UEY8 706 aaKnown RBP29.45■■■□□ 2.3
SMAD6-202ENST00000557916 GCOM1H8Y6P7 765 aaPredicted RBP29.44■■■□□ 2.3
SMAD6-202ENST00000557916 POLR2MP0CAP2 368 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 NAPAP54920 295 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 MTFR1Q15390 333 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 MAP3K21Q5TCX8 1036 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 MAMDC4Q6UXC1 1216 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 BARHL2Q9NY43 387 aa29.44■■■□□ 2.3
SMAD6-202ENST00000557916 CENPFP49454 3210 aa29.43■■■□□ 2.3
SMAD6-202ENST00000557916 ASTN1O14525 1302 aa29.43■■■□□ 2.3
SMAD6-202ENST00000557916 HOXA13P31271 388 aaPredicted RBP29.43■■■□□ 2.3
SMAD6-202ENST00000557916 COL20A1Q9P218 1284 aa29.43■■■□□ 2.3
SMAD6-202ENST00000557916 SYNGAP1Q96PV0 1343 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 ASB14A6NK59 587 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 STXBP3O00186 592 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 PPP1R18Q6NYC8 613 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 DNERQ8NFT8 737 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 PSTPIP2Q9H939 334 aa29.42■■■□□ 2.3
SMAD6-202ENST00000557916 SH2B1Q9NRF2 756 aaPredicted RBP29.42■■■□□ 2.3
SMAD6-202ENST00000557916 RPTORQ8N122 1335 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 CTDNEP1O95476 244 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 CCL5P13501 91 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 TYW1BQ6NUM6 668 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 ARMCX2Q7L311 632 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 CUL5Q93034 780 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 TAAR1Q96RJ0 339 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 UNC93B1Q9H1C4 597 aa29.41■■■□□ 2.3
SMAD6-202ENST00000557916 RBBP6Q7Z6E9 1792 aaKnown RBP29.4■■■□□ 2.3
SMAD6-202ENST00000557916 CD2BP2O95400 341 aaKnown RBP29.4■■■□□ 2.3
SMAD6-202ENST00000557916 DEXIO95424 95 aa29.4■■■□□ 2.3
SMAD6-202ENST00000557916 ALDH5A1P51649 535 aaPredicted RBP29.4■■■□□ 2.3
SMAD6-202ENST00000557916 RNF208Q9H0X6 261 aa29.4■■■□□ 2.3
SMAD6-202ENST00000557916 HMX1Q9NP08 348 aaPredicted RBP29.4■■■□□ 2.3
SMAD6-202ENST00000557916 SNAI1O95863 264 aaPredicted RBP29.39■■■□□ 2.3
SMAD6-202ENST00000557916 PRAMEF19Q5SWL8 479 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 USP17L6PQ6QN14 398 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 CCDC83Q8IWF9 413 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 RMDN3Q96TC7 470 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.39■■■□□ 2.3
SMAD6-202ENST00000557916 CNPY2Q9Y2B0 182 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 LCTP09848 1927 aa29.39■■■□□ 2.3
SMAD6-202ENST00000557916 LOC102724159A0A0B4J2E5 919 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 DTNBO60941 627 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 CYBAP13498 195 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 MCM2P49736 904 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 ST3GAL1Q11201 340 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 PWP2Q15269 919 aaKnown RBP29.38■■■□□ 2.29
SMAD6-202ENST00000557916 TRPV1Q8NER1 839 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 SMARCC2Q8TAQ2 1214 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 NSUN6Q8TEA1 469 aaKnown RBP29.38■■■□□ 2.29
SMAD6-202ENST00000557916 CCDC12Q8WUD4 166 aaPredicted RBP29.38■■■□□ 2.29
SMAD6-202ENST00000557916 NRBP1Q9UHY1 535 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 DDX49Q9Y6V7 483 aaKnown RBP29.38■■■□□ 2.29
SMAD6-202ENST00000557916 STK36Q9NRP7 1315 aa29.38■■■□□ 2.29
SMAD6-202ENST00000557916 SMCO2A6NFE2 343 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 CCDC85CA6NKD9 419 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 PIK3CDO00329 1044 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 MEIS2O14770 477 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 CCND3P30281 292 aaPredicted RBP29.37■■■□□ 2.29
SMAD6-202ENST00000557916 FCHSD1Q86WN1 690 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 MPHOSPH6Q99547 160 aaKnown RBP29.37■■■□□ 2.29
SMAD6-202ENST00000557916 TMEM106CQ9BVX2 250 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.37■■■□□ 2.29
SMAD6-202ENST00000557916 RIC8AQ9NPQ8 531 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 B4DLN1 442 aa29.37■■■□□ 2.29
SMAD6-202ENST00000557916 MRPL12P52815 198 aaKnown RBP29.37■■■□□ 2.29
SMAD6-202ENST00000557916 ARHGEF16Q5VV41 709 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms