RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ALAS1P13196 640 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 TDO2P48775 406 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 TAP1Q03518 808 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 GIMAP6Q6P9H5 292 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 NEDD1Q8NHV4 660 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 APPBP2Q92624 585 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 TRERF1Q96PN7 1200 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 SEZ6LQ9BYH1 1024 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 C11orf16Q9NQ32 467 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 ZBTB40Q9NUA8 1239 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 CYP39A1Q9NYL5 469 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 Q9Y3F1 56 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 HCN4Q9Y3Q4 1203 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 LAMA4Q16363 1823 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 FAM86C2PA6NEL3 165 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 RBAK-RBAKDNI3L0D1 243 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 GTPBP6O43824 516 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 LPXNO60711 386 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 TSPY3P0CV98 308 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 TSPY8P0CW00 308 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 FDX1P10109 184 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 PURAQ00577 322 aaKnown RBP9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 IKQ13123 557 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 TKFCQ3LXA3 575 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 DUSP28Q4G0W2 176 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 TSHZ3Q63HK5 1081 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 IQSEC1Q6DN90 963 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 KCTD1Q719H9 257 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 FAM160B2Q86V87 743 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 ZNF444Q8N0Y2 327 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 KBTBD3Q8NAB2 608 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 MORC4Q8TE76 937 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 STAG1Q8WVM7 1258 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 ARNTL2Q8WYA1 636 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 GMCL1Q96IK5 515 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 SLC9A7Q96T83 725 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 VTA1Q9NP79 307 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 PRR12Q9ULL5 1215 aa9.72□□□□□ -0.85
CCDC88C-214ENST00000557507 RNF113AO15541 343 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 MYL3P08590 195 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 MCCP23508 829 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 SLC1A4P43007 532 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 GRB10Q13322 594 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 TMEM31Q5JXX7 168 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 NSMFQ6X4W1 530 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 KIAA1211Q6ZU35 1233 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 HERC6Q8IVU3 1022 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 CHURC1Q8WUH1 139 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 LRRCC1Q9C099 1032 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 CD320Q9NPF0 282 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 CCPG1Q9ULG6 757 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 DDX19BQ9UMR2 479 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 COG5Q9UP83 839 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 ARIH1Q9Y4X5 557 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 KAT6AQ92794 2004 aa9.71□□□□□ -0.86
CCDC88C-214ENST00000557507 LCHNA4D1U4 455 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 NFIBO00712 420 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 NMT2O60551 498 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 PLA2G6O60733 806 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 IQCF3P0C7M6 154 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 SUPT20HL2P0C7V6 817 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 ACTN1P12814 892 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 ALDH5A1P51649 535 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 TFAP4Q01664 338 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 NBPF20Q3BBV1 942 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 FAM47CQ5HY64 1035 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 SLC30A10Q6XR72 485 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 TMCO2Q7Z6W1 182 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 IFNL3Q8IZI9 196 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 GDPD5Q8WTR4 605 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 HLA-CQ95604 372 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 WDR11Q9BZH6 1224 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 ZNF287Q9HBT7 754 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 ECHDC1Q9NTX5 307 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 POLR3EQ9NVU0 708 aa9.7□□□□□ -0.86
CCDC88C-214ENST00000557507 RBM47A0AV96 593 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 PITPNM1O00562 1244 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 APPP05067 770 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 GNAT2P19087 354 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 RFC2P35250 354 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 CPT1AP50416 773 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 PPARAQ07869 468 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 BAATQ14032 418 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 LOXHD1Q8IVV2 1947 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 OR6J1Q8NGC5 347 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 PHOSPHO2Q8TCD6 241 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 COPS5Q92905 334 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 SEC62Q99442 399 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 MTG1Q9BT17 334 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 KIAA1671Q9BY89 1806 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 RANBP17Q9H2T7 1088 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 IL17RBQ9NRM6 502 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 STX8Q9UNK0 236 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 MTMR7Q9Y216 660 aa9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.69□□□□□ -0.86
CCDC88C-214ENST00000557507 PATL2C9JE40 543 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 FOXP2O15409 715 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 GPR37L1O60883 481 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 ICAM1P05362 532 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 SLC16A2P36021 539 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms