RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 SH2D4AQ9H788 454 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 PRDM9Q9NQV7 894 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 IGSF5Q9NSI5 407 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 THEGQ9P2T0 379 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 SWAP70Q9UH65 585 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 ZNF214Q9UL59 606 aaPredicted RBP7.05□□□□□ -1.28
VPS33B-207ENST00000557470 PPP1R9AQ9ULJ8 1098 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 EXOC6BQ9Y2D4 811 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 DIS3Q9Y2L1 958 aaKnown RBP7.05□□□□□ -1.28
VPS33B-207ENST00000557470 XIRP2A4UGR9 3374 aa7.05□□□□□ -1.28
VPS33B-207ENST00000557470 COL11A1P12107 1806 aaPredicted RBP7.05□□□□□ -1.28
VPS33B-207ENST00000557470 ZNFX1Q9P2E3 1918 aaKnown RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 CYP2D7A0A087X1C5 515 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 GOLIM4O00461 696 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 ADCY6O43306 1168 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 SNAI1O95863 264 aaPredicted RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 ACRP10323 421 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 EEF2P13639 858 aaKnown RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 CDK8P49336 464 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 PPIGQ13427 754 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 TTF1Q15361 905 aaPredicted RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 CCDC85BQ15834 202 aaPredicted RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 SLFNL1Q499Z3 407 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 FAM83BQ5T0W9 1011 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 ZKSCAN2Q63HK3 967 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 BRICD5Q6PL45 260 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 UHRF1Q96T88 793 aaPredicted RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 ARMT1Q9H993 441 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 ZHX1Q9UKY1 873 aaPredicted RBP7.04□□□□□ -1.28
VPS33B-207ENST00000557470 FAM184BQ9ULE4 1060 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 TRANK1O15050 2925 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 PLXNA1Q9UIW2 1896 aa7.04□□□□□ -1.28
VPS33B-207ENST00000557470 MYO9BQ13459 2157 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ELP1O95163 1332 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MROH7Q68CQ1 1323 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 SYNGAP1Q96PV0 1343 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 A0A0U1RQG5 324 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 DUSP11O75319 330 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MBD4O95243 580 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ASGR1P07306 291 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 C6orf222P0C671 652 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 RLBP1P12271 317 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 IGFBP4P22692 258 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CST5P28325 142 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 COPB2P35606 906 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 PLA2G5P39877 138 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CDK7P50613 346 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MRPS5P82675 430 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 SNRNP48Q6IEG0 339 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CEP85Q6P2H3 762 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 PSRC1Q6PGN9 363 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CCDC174Q6PII3 467 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 TRAF7Q6Q0C0 670 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MAMDC4Q6UXC1 1216 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 C16orf86Q6ZW13 317 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ZNF365Q70YC5 407 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ZNF598Q86UK7 904 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ERC1Q8IUD2 1116 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ITPRIPQ8IWB1 547 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 FAM126BQ8IXS8 530 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 TMEM199Q8N511 208 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MSL3Q8N5Y2 521 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 BANK1Q8NDB2 785 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CCDC17Q96LX7 622 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 GLT1D1Q96MS3 346 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 DNAJC2Q99543 621 aaKnown RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 NUP88Q99567 741 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 TEX13BQ9BXU2 312 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 PPP1R12CQ9BZL4 782 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 KANSL2Q9H9L4 492 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 IL1RAPL2Q9NP60 686 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 ATP8A2Q9NTI2 1148 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 FAM217BQ9NTX9 383 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 CXXC1Q9P0U4 656 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-207ENST00000557470 RIPK3Q9Y572 518 aa7.03□□□□□ -1.28
VPS33B-207ENST00000557470 MYH8P13535 1937 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 DNAJC25-GNG10A0A024R161 153 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 RBM47A0AV96 593 aaKnown RBP7.02□□□□□ -1.29
VPS33B-207ENST00000557470 USP17L12C9JPN9 530 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 USP17L21D6R901 530 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 ARVCFO00192 962 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 CTAGE5O15320 804 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 KDM4AO75164 1064 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 CHGBP05060 677 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 BRD2P25440 801 aaKnown RBP7.02□□□□□ -1.29
VPS33B-207ENST00000557470 CYP2C18P33260 490 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 ACVR2BQ13705 512 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 RAB30Q15771 203 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 GNASQ5JWF2 1037 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 C12orf60Q5U649 245 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 FTSJ3Q8IY81 847 aaKnown RBP7.02□□□□□ -1.29
VPS33B-207ENST00000557470 PCSK9Q8NBP7 692 aaKnown RBP7.02□□□□□ -1.29
VPS33B-207ENST00000557470 RHPN1Q8TCX5 695 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 HERVK_113Q902F9 699 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 VTI1AQ96AJ9 217 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 DDX11Q96FC9 970 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 FGD4Q96M96 766 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 NECAB3Q96P71 396 aaPredicted RBP7.02□□□□□ -1.29
VPS33B-207ENST00000557470 SLF1Q9BQI6 1058 aa7.02□□□□□ -1.29
VPS33B-207ENST00000557470 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms