RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 TAPT1Q6NXT6 567 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 NFXL1Q6ZNB6 911 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 NEK1Q96PY6 1258 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 AMNQ9BXJ7 453 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 COL20A1Q9P218 1284 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 PHF24Q9UPV7 400 aa23.84■■□□□ 1.41
VTI1B-205ENST00000555543 COLQQ9Y215 455 aaPredicted RBP23.84■■□□□ 1.41
VTI1B-205ENST00000555543 RXRAP19793 462 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 TMEM63BQ5T3F8 832 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 CHRDL2Q6WN34 429 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 RAB11FIP4Q86YS3 637 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 KLHDC9Q8NEP7 349 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 TCEANC2Q96MN5 208 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 MAP3K14Q99558 947 aa23.83■■□□□ 1.41
VTI1B-205ENST00000555543 UPF3AQ9H1J1 476 aaKnown RBP23.83■■□□□ 1.41
VTI1B-205ENST00000555543 MRPL11Q9Y3B7 192 aaKnown RBP23.83■■□□□ 1.41
VTI1B-205ENST00000555543 CCDC69A6NI79 296 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 SYN1P17600 705 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 EDNRBP24530 442 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 TNFAIP2Q03169 654 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 CCSAPQ6IQ19 270 aaPredicted RBP23.82■■□□□ 1.4
VTI1B-205ENST00000555543 SLC39A5Q6ZMH5 540 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 SYTL5Q8TDW5 730 aaPredicted RBP23.82■■□□□ 1.4
VTI1B-205ENST00000555543 VTA1Q9NP79 307 aa23.82■■□□□ 1.4
VTI1B-205ENST00000555543 LOC102724159A0A0B4J2E5 919 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 A0A1W2PQ45 241 aaPredicted RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 A0A1W2PQY0 241 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 CTAGE5O15320 804 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 C6orf222P0C671 652 aaPredicted RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 SMPD1P17405 629 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 GJA9P57773 515 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 RTP1P59025 263 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 EXOSC10Q01780 885 aaKnown RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 PWP2Q15269 919 aaKnown RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 TMTC2Q8N394 836 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 DNERQ8NFT8 737 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 CTCFLQ8NI51 663 aaPredicted RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 KCNB2Q92953 911 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 GNEQ9Y223 722 aaKnown RBP23.81■■□□□ 1.4
VTI1B-205ENST00000555543 PCDHA1Q9Y5I3 950 aa23.81■■□□□ 1.4
VTI1B-205ENST00000555543 PLEKHA8P1O95397 391 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 CST5P28325 142 aaPredicted RBP23.8■■□□□ 1.4
VTI1B-205ENST00000555543 HSPA4P34932 840 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 SNX17Q15036 470 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 SGMS1Q86VZ5 419 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 MCF2L2Q86YR7 1114 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 PIBF1Q8WXW3 757 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 TAAR1Q96RJ0 339 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 SPZ1Q9BXG8 430 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 MAF1Q9H063 256 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 PRO3102Q9H379 93 aa23.8■■□□□ 1.4
VTI1B-205ENST00000555543 TRIOBPQ9H2D6 2365 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 CFBP00751 764 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 KIF5BP33176 963 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 ACLYP53396 1101 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 KRT32Q14532 448 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 KCNA10Q16322 511 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 HABP4Q5JVS0 413 aaKnown RBP23.79■■□□□ 1.4
VTI1B-205ENST00000555543 NOL8Q76FK4 1167 aaKnown RBP23.79■■□□□ 1.4
VTI1B-205ENST00000555543 DHX32Q7L7V1 743 aaKnown RBP23.79■■□□□ 1.4
VTI1B-205ENST00000555543 TLK2Q86UE8 772 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 TSEN34Q9BSV6 310 aaKnown RBP23.79■■□□□ 1.4
VTI1B-205ENST00000555543 ATP11BQ9Y2G3 1177 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 SLC12A7Q9Y666 1083 aa23.79■■□□□ 1.4
VTI1B-205ENST00000555543 PNMA6FA0A0J9YX94 578 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 CPA1P15085 419 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 HSD17B4P51659 736 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 GHRHRQ02643 423 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 PDE4DQ08499 809 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 TRIM60Q495X7 471 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 IQSEC1Q6DN90 963 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 CMTR1Q8N1G2 835 aaKnown RBP23.78■■□□□ 1.4
VTI1B-205ENST00000555543 SRBD1Q8N5C6 995 aaKnown RBP23.78■■□□□ 1.4
VTI1B-205ENST00000555543 RBM27Q9P2N5 1060 aaKnown RBP23.78■■□□□ 1.4
VTI1B-205ENST00000555543 SNX14Q9Y5W7 946 aa23.78■■□□□ 1.4
VTI1B-205ENST00000555543 RBM47A0AV96 593 aaKnown RBP23.77■■□□□ 1.4
VTI1B-205ENST00000555543 REC8O95072 547 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 NKX3-2P78367 333 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 BEX3Q00994 111 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 APOA5Q6Q788 366 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 MICU3Q86XE3 530 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 SPC25Q9HBM1 224 aa23.77■■□□□ 1.4
VTI1B-205ENST00000555543 MOXD2PA6NHM9 499 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 CALM1P0DP23 149 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 CALM2P0DP24 149 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 CALM3P0DP25 149 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 GNASQ5JWF2 1037 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 C1orf53Q5VUE5 145 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 RMDN3Q96TC7 470 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 BRPF3Q9ULD4 1205 aa23.76■■□□□ 1.39
VTI1B-205ENST00000555543 DYNC1LI2O43237 492 aaPredicted RBP23.75■■□□□ 1.39
VTI1B-205ENST00000555543 ASGR1P07306 291 aa23.75■■□□□ 1.39
VTI1B-205ENST00000555543 HOXA13P31271 388 aaPredicted RBP23.75■■□□□ 1.39
VTI1B-205ENST00000555543 DUSP28Q4G0W2 176 aa23.75■■□□□ 1.39
VTI1B-205ENST00000555543 FANCBQ8NB91 859 aa23.75■■□□□ 1.39
VTI1B-205ENST00000555543 NSUN6Q8TEA1 469 aaKnown RBP23.75■■□□□ 1.39
VTI1B-205ENST00000555543 JAKMIP1Q96N16 626 aaKnown RBP23.75■■□□□ 1.39
VTI1B-205ENST00000555543 MPHOSPH6Q99547 160 aaKnown RBP23.75■■□□□ 1.39
VTI1B-205ENST00000555543 GDF15Q99988 308 aa23.75■■□□□ 1.39
VTI1B-205ENST00000555543 LZTS2Q9BRK4 669 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms