RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 CUL4BQ13620 913 aa10.09□□□□□ -0.79
TDP1-210ENST00000554976 NBPF12Q5TAG4 269 aaPredicted RBP10.09□□□□□ -0.79
TDP1-210ENST00000554976 DTHD1Q6ZMT9 781 aa10.09□□□□□ -0.79
TDP1-210ENST00000554976 CCDC84Q86UT8 332 aaPredicted RBP10.09□□□□□ -0.79
TDP1-210ENST00000554976 SPICE1Q8N0Z3 855 aa10.09□□□□□ -0.79
TDP1-210ENST00000554976 PYM1Q9BRP8 204 aaKnown RBP10.09□□□□□ -0.79
TDP1-210ENST00000554976 USP17L15C9J2P7 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L13C9JLJ4 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L11C9JVI0 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L18D6R9N7 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L22D6RA61 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L17D6RBQ6 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L19D6RCP7 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L20D6RJB6 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 CD44P16070 742 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 CASP1P29466 404 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L24Q0WX57 530 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 HYIQ5T013 277 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP17L6PQ6QN14 398 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 PDILTQ8N807 584 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 MRFAP1L1Q96HT8 127 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 KCNF1Q9H3M0 494 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 PPP2R3BQ9Y5P8 575 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 UTRNP46939 3433 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 CYP3A4P08684 503 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 CDC25AP30304 524 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 SREBF1P36956 1147 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 USP11P51784 963 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 MRPL12P52815 198 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 FMR1Q06787 632 aaKnown RBP eCLIP10.08□□□□□ -0.8
TDP1-210ENST00000554976 SPIRE1Q08AE8 756 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 KARSQ15046 597 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 Q4G0T1 1027 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 TMEM119Q4V9L6 283 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 CT47A1Q5JQC4 288 aaPredicted RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 NOL9Q5SY16 702 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 FBXO11Q86XK2 927 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 APOBEC3FQ8IUX4 373 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 ETNPPLQ8TBG4 499 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 ANP32BQ92688 251 aaKnown RBP10.08□□□□□ -0.8
TDP1-210ENST00000554976 PNMA5Q96PV4 448 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 ANO3Q9BYT9 981 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 CCDC39Q9UFE4 941 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 FEM1BQ9UK73 627 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 GJA3Q9Y6H8 435 aa10.08□□□□□ -0.8
TDP1-210ENST00000554976 FRMPD4Q14CM0 1322 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 PPP1R3GB7ZBB8 358 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 GTPBP6O43824 516 aaPredicted RBP10.07□□□□□ -0.8
TDP1-210ENST00000554976 GCFC2P16383 781 aaKnown RBP10.07□□□□□ -0.8
TDP1-210ENST00000554976 ZNF18P17022 549 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 INPP5BP32019 993 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 CIITAP33076 1130 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 GRB10Q13322 594 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 PDIA5Q14554 519 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 ANGEL2Q5VTE6 544 aaKnown RBP10.07□□□□□ -0.8
TDP1-210ENST00000554976 FAM160B2Q86V87 743 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 GSDMAQ96QA5 445 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 WDR18Q9BV38 432 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 NAT10Q9H0A0 1025 aaKnown RBP10.07□□□□□ -0.8
TDP1-210ENST00000554976 DGKZQ13574 1117 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 MCTP2Q6DN12 878 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 CNNM4Q6P4Q7 775 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 IQUBQ8NA54 791 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 SMARCE1Q969G3 411 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 SH2D4AQ9H788 454 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 EMILIN3Q9NT22 766 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 RPTORQ8N122 1335 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 ESPNB1AK53 854 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 EPS15P42566 896 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 ISM2Q6H9L7 571 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 C12orf42Q96LP6 360 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 SYT17Q9BSW7 474 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 CUEDC2Q9H467 287 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 MAGEF1Q9HAY2 307 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 BLOC1S4Q9NUP1 217 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 ZKSCAN5Q9Y2L8 839 aa10.07□□□□□ -0.8
TDP1-210ENST00000554976 IGLV3-22A0A075B6J6 115 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 WDR46O15213 610 aaKnown RBP10.06□□□□□ -0.8
TDP1-210ENST00000554976 CALCRLQ16602 461 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 ECM1Q16610 540 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 APTXQ7Z2E3 356 aaKnown RBP10.06□□□□□ -0.8
TDP1-210ENST00000554976 ZSCAN30Q86W11 494 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 SCYL3Q8IZE3 742 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 MLKLQ8NB16 471 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 LPAR1Q92633 364 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 ZNF341Q9BYN7 854 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 DDX25Q9UHL0 483 aaKnown RBP10.06□□□□□ -0.8
TDP1-210ENST00000554976 HOOK1Q9UJC3 728 aaKnown RBP10.06□□□□□ -0.8
TDP1-210ENST00000554976 MYL1P05976 194 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 HSD17B4P51659 736 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 REPS2Q8NFH8 660 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 CLEC4DQ8WXI8 215 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 NAP1L4Q99733 375 aaKnown RBP10.06□□□□□ -0.8
TDP1-210ENST00000554976 NUDT12Q9BQG2 462 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 FBXO28Q9NVF7 368 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.06□□□□□ -0.8
TDP1-210ENST00000554976 ARID2Q68CP9 1835 aa10.06□□□□□ -0.8
TDP1-210ENST00000554976 FAM86B1E9PN63 330 aa10.05□□□□□ -0.8
TDP1-210ENST00000554976 SLC26A4O43511 780 aa10.05□□□□□ -0.8
TDP1-210ENST00000554976 ZNF500O60304 480 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms