RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CST5P28325 142 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 GJB2P29033 226 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 ZMYM1Q5SVZ6 1142 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 PPP2R2DQ66LE6 453 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 CCDC174Q6PII3 467 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 REPS2Q8NFH8 660 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 GLT1D1Q96MS3 346 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 NEK1Q96PY6 1258 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 RIOK1Q9BRS2 568 aaKnown RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 VCPKMTQ9H867 229 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 ZHX1Q9UKY1 873 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 ZNF214Q9UL59 606 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-216ENST00000554975 FAM184BQ9ULE4 1060 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 CNPY2Q9Y2B0 182 aa12.89□□□□□ -0.35
SHMT2-216ENST00000554975 GREB1LQ9C091 1923 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 A0A0U1RQG5 324 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 DUSP11O75319 330 aaKnown RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 FGBP02675 491 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 POLR3DP05423 398 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 ADD2P35612 726 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 KRT85P78386 507 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 HMGN5P82970 282 aaKnown RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 KCTD2Q14681 263 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 SKIV2LQ15477 1246 aaKnown RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 ADCK5Q3MIX3 580 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 SLFNL1Q499Z3 407 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 HS1BP3Q53T59 392 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 CCDC183Q5T5S1 534 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 ZNF589Q86UQ0 364 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 GPT2Q8TD30 523 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 VTI1AQ96AJ9 217 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 DYNLL2Q96FJ2 89 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 FGD4Q96M96 766 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 PPP1R9BQ96SB3 815 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 LLPHQ9BRT6 129 aaKnown RBP12.88□□□□□ -0.35
SHMT2-216ENST00000554975 ARMT1Q9H993 441 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 CD320Q9NPF0 282 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 TMX2Q9Y320 296 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 MTCH2Q9Y6C9 303 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 MYH4Q9Y623 1939 aa12.88□□□□□ -0.35
SHMT2-216ENST00000554975 WDFY4Q6ZS81 3184 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 TCRBV5S4A2TA0A5A2 114 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 RNF113AO15541 343 aaKnown RBP12.87□□□□□ -0.35
SHMT2-216ENST00000554975 ARHGEF15O94989 841 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 MBD4O95243 580 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 PTGS1P23219 599 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 STAT3P40763 770 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 CCL23P55773 120 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 TMEM179Q6ZVK1 233 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 LCORLQ8N3X6 602 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 SDR42E1Q8WUS8 393 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 PANK2Q9BZ23 570 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 UPF3AQ9H1J1 476 aaKnown RBP12.87□□□□□ -0.35
SHMT2-216ENST00000554975 WNT8AQ9H1J5 351 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 CERS4Q9HA82 394 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 MCM9Q9NXL9 1143 aa12.87□□□□□ -0.35
SHMT2-216ENST00000554975 LCTP09848 1927 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 DNAJC25-GNG10A0A024R161 153 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 VWA5AO00534 786 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 WDR46O15213 610 aaKnown RBP12.86□□□□□ -0.35
SHMT2-216ENST00000554975 GPR37L1O60883 481 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 GJA9P57773 515 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 FGD1P98174 961 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 BEX3Q00994 111 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 ICA1Q05084 483 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 ME3Q16798 604 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 AAK1Q2M2I8 961 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 MAMDC4Q6UXC1 1216 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 GTF3C6Q969F1 213 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 HIPK3Q9H422 1215 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 TSPY26PQ9H489 355 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 ARHGEF10LQ9HCE6 1279 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 MTMR6Q9Y217 621 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 RIPK3Q9Y572 518 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 ASTN1O14525 1302 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 WDR19Q8NEZ3 1342 aa12.86□□□□□ -0.35
SHMT2-216ENST00000554975 TRIP12Q14669 1992 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 TANC1Q9C0D5 1861 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 VPS37CA5D8V6 355 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 TLR3O15455 904 aaKnown RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 CHGBP05060 677 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 ACVR2BQ13705 512 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 UBE3CQ15386 1083 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 CCDC144BQ3MJ40 725 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 GNASQ5JWF2 1037 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 FOXD4L5Q5VV16 416 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 SPRED2Q7Z698 418 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 GAS2L3Q86XJ1 694 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 SLC43A3Q8NBI5 491 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 PCSK9Q8NBP7 692 aaKnown RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 FOXD4L4Q8WXT5 416 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 APPBP2Q92624 585 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 SCLYQ96I15 445 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 SCAND2PQ9GZW5 306 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-216ENST00000554975 TMEM63CQ9P1W3 806 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 PPP1R9AQ9ULJ8 1098 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 PCDHA11Q9Y5I1 949 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 GRIN2DO15399 1336 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms