RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LTBP2Q14767 1821 aa18.69■□□□□ 0.58
CCDC88C-209ENST00000554872 B4DLN1 442 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 ZBTB5O15062 677 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 DDAH1O94760 285 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 MCM5P33992 734 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 MRPL12P52815 198 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 KCNA10Q16322 511 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 USH1GQ495M9 461 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 TMEM67Q5HYA8 995 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 CREB3L3Q68CJ9 461 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 ANKRD33Q7Z3H0 272 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 TMTC2Q8N394 836 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 TOX2Q96NM4 488 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 AMNQ9BXJ7 453 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 LY9Q9HBG7 655 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 ANO2Q9NQ90 1003 aa18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 MAP3K20Q9NYL2 800 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-209ENST00000554872 MYADML2A6NDP7 307 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 C6orf222P0C671 652 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 SYN1P17600 705 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 SMARCA1P28370 1054 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 LIFRP42702 1097 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 TSGA10IPQ3SY00 556 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 TRIM60Q495X7 471 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 RNF20Q5VTR2 975 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 CATIPQ7Z7H3 387 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 SKAP1Q86WV1 359 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 FBXO16Q8IX29 292 aaPredicted RBP18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 PURBQ96QR8 312 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 SENP2Q9HC62 589 aa18.67■□□□□ 0.58
CCDC88C-209ENST00000554872 MYH6P13533 1939 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 MYCNP04198 464 aaPredicted RBP18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 SMPD1P17405 629 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 CALML3P27482 149 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 HSD17B4P51659 736 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 SLC35G1Q2M3R5 365 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 DUSP28Q4G0W2 176 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 TLK2Q86UE8 772 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 SYTL5Q8TDW5 730 aaPredicted RBP18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 FERMT2Q96AC1 680 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 GLT1D1Q96MS3 346 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 SEZ6LQ9BYH1 1024 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 PDLIM7Q9NR12 457 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 ATP11BQ9Y2G3 1177 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 MROH7Q68CQ1 1323 aa18.66■□□□□ 0.58
CCDC88C-209ENST00000554872 SH2B2O14492 632 aaPredicted RBP18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 OPLAHO14841 1288 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 PRC1O43663 620 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 DHX16O60231 1041 aaKnown RBP18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 CABYRO75952 493 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 ASGR1P07306 291 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 ERICH6BQ5W0A0 696 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 ZNF654Q8IZM8 581 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 IWS1Q96ST2 819 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 STARD7Q9NQZ5 370 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 PRKAG2Q9UGJ0 569 aa18.65■□□□□ 0.58
CCDC88C-209ENST00000554872 NKRFO15226 690 aaKnown RBP eCLIP18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 CYTH3O43739 400 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 PPP1R11O60927 126 aaPredicted RBP18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 NEFLP07196 543 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 KIF5BP33176 963 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 CDK7P50613 346 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 TLE2Q04725 743 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 PDE4DQ08499 809 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 FSCN1Q16658 493 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 GNASQ5JWF2 1037 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 CHST3Q7LGC8 479 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 SGMS1Q86VZ5 419 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 NSUN6Q8TEA1 469 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 SCFD2Q8WU76 684 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 LZTS2Q9BRK4 669 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 SPZ1Q9BXG8 430 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 PDGFCQ9NRA1 345 aa18.64■□□□□ 0.57
CCDC88C-209ENST00000554872 PNMA6FA0A0J9YX94 578 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 KIAA0355O15063 1070 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 LRIT3Q3SXY7 679 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 TDHQ8IZJ6 230 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 SLC43A3Q8NBI5 491 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 LBHD1Q9BQE6 289 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 WDR11Q9BZH6 1224 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 AP5M1Q9H0R1 490 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 VAT1LQ9HCJ6 419 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 COL20A1Q9P218 1284 aa18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 DDX49Q9Y6V7 483 aaKnown RBP18.63■□□□□ 0.57
CCDC88C-209ENST00000554872 A0A0U1RQG5 324 aaPredicted RBP18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 ZEB2O60315 1214 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 CLTBP09497 229 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 CALM1P0DP23 149 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 CALM2P0DP24 149 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 CALM3P0DP25 149 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 GNAQP50148 359 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 KRT32Q14532 448 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 EEPD1Q7L9B9 569 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 CTCFLQ8NI51 663 aaPredicted RBP18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 KCNB2Q92953 911 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 UBE2OQ9C0C9 1292 aaKnown RBP18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 PCDHA1Q9Y5I3 950 aa18.62■□□□□ 0.57
CCDC88C-209ENST00000554872 SZT2Q5T011 3432 aa18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 EPB41L2O43491 1005 aaKnown RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms