RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ADORA2AP29274 412 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 HSD17B4P51659 736 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 ADCY7P51828 1080 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 MRPL12P52815 198 aaKnown RBP14.07□□□□□ -0.16
SHMT2-209ENST00000553949 NLRP5P59047 1200 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 SLC30A10Q6XR72 485 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 SAMD3Q8N6K7 520 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 CUL5Q93034 780 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 NUDT12Q9BQG2 462 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 GLT8D2Q9H1C3 349 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 C6orf50Q9HD87 102 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 RIC8AQ9NPQ8 531 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 MAP3K20Q9NYL2 800 aaKnown RBP14.07□□□□□ -0.16
SHMT2-209ENST00000553949 KCNJ14Q9UNX9 436 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 KIF3AQ9Y496 699 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 RBM19Q9Y4C8 960 aaKnown RBP14.07□□□□□ -0.16
SHMT2-209ENST00000553949 DNAJC25-GNG10A0A024R161 153 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 MEIS2O14770 477 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 COBLO75128 1261 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 HOXD10P28358 340 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 GNA11P29992 359 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 HOXA13P31271 388 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-209ENST00000553949 FOSBP53539 338 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 PRKCZQ05513 592 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 MAP2K5Q13163 448 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 TRIM29Q14134 588 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 USP17L6PQ6QN14 398 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 TEX2Q8IWB9 1127 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 SYTL5Q8TDW5 730 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-209ENST00000553949 USP6NLQ92738 828 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 C8orf76Q96K31 380 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 PHF20Q9BVI0 1012 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 COL20A1Q9P218 1284 aa14.06□□□□□ -0.16
SHMT2-209ENST00000553949 POTEB2H3BUK9 544 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 RGS2P41220 211 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 FLT3LGP49771 235 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 UBE2SQ16763 222 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 ZNF792Q3KQV3 632 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 KRT40Q6A162 431 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 GALNT17Q6IS24 598 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 DPP9Q86TI2 863 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 FAM133AQ8N9E0 248 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 SPRYD3Q8NCJ5 442 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 PURBQ96QR8 312 aaKnown RBP14.05□□□□□ -0.16
SHMT2-209ENST00000553949 SRRDQ9UH36 339 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 PCDHA4Q9UN74 947 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 GABRQQ9UN88 632 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 TRIM17Q9Y577 477 aa14.05□□□□□ -0.16
SHMT2-209ENST00000553949 ADAMTS3O15072 1205 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 HOXC6P09630 235 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 CYP2B6P20813 491 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 GUCY1B3Q02153 619 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 CNTN2Q02246 1040 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 NPY5RQ15761 445 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 OTOP1Q7RTM1 612 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 FCHSD1Q86WN1 690 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 DAGLBQ8NCG7 672 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 FBXO18Q8NFZ0 1043 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 BICD2Q8TD16 824 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 SLC5A4Q9NY91 659 aa14.04□□□□□ -0.16
SHMT2-209ENST00000553949 DIS3Q9Y2L1 958 aaKnown RBP14.04□□□□□ -0.16
SHMT2-209ENST00000553949 SMCHD1A6NHR9 2005 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 SOWAHBA6NEL2 793 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 MMP1P03956 469 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 XRCC5P13010 732 aaKnown RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 CLK2P49760 499 aaKnown RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 PRMT2P55345 433 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 LARP1BQ659C4 914 aaKnown RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 BLIDQ8IZY5 108 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 REXO1Q8N1G1 1221 aaKnown RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 NPLOC4Q8TAT6 608 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 FGD4Q96M96 766 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 TAAR1Q96RJ0 339 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 APBA2Q99767 749 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 TMEM260Q9NX78 707 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 BIN2Q9UBW5 565 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 ADD3Q9UEY8 706 aaKnown RBP14.03□□□□□ -0.16
SHMT2-209ENST00000553949 ZSWIM8A7E2V4 1837 aa14.03□□□□□ -0.16
SHMT2-209ENST00000553949 MYH6P13533 1939 aa14.02□□□□□ -0.16
SHMT2-209ENST00000553949 ASTN1O14525 1302 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 SPDYE3A6NKU9 549 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 H3BQV1 296 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 M0R2N6 131 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 PDCP20941 246 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 KRT2P35908 639 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 AP3B2Q13367 1082 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 IRF5Q13568 498 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 SAFBQ15424 915 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT2-209ENST00000553949 IFFO2Q5TF58 517 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 JAKMIP3Q5VZ66 844 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 ZNF467Q7Z7K2 595 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-209ENST00000553949 DNERQ8NFT8 737 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 RASGRP4Q8TDF6 673 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 OXER1Q8TDS5 423 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 NSUN6Q8TEA1 469 aaKnown RBP14.02□□□□□ -0.17
SHMT2-209ENST00000553949 MAML3Q96JK9 1138 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 RMDN3Q96TC7 470 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 BRMS1Q9HCU9 246 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 PRDM10Q9NQV6 1147 aa14.02□□□□□ -0.17
SHMT2-209ENST00000553949 PCDHA6Q9UN73 950 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms