RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 JAKMIP2Q96AA8 810 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 ZFP91Q96JP5 570 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 PIGSQ96S52 555 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 HAUS4Q9H6D7 363 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 NHEJ1Q9H9Q4 299 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 ZNF831Q5JPB2 1677 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 PDE2AO00408 941 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ERLIN1O75477 346 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 CCNE1P24864 410 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TXKP42681 527 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 MTIF2P46199 727 aaKnown RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ATP2B2Q01814 1243 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 MEA1Q16626 185 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TPTE2Q6XPS3 522 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 CLEC10AQ8IUN9 316 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 DAGLBQ8NCG7 672 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC102AQ96A19 550 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 NYXQ9GZU5 481 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ZMYND12Q9H0C1 365 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 SEMA6BQ9H3T3 888 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TCP11L1Q9NUJ3 509 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 SAR1BQ9Y6B6 198 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ROBO3Q96MS0 1386 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ARFGEF1Q9Y6D6 1849 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 FRMPD2Q68DX3 1309 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 POTEB2H3BUK9 544 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ZPR1O75312 459 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 MYBL2P10244 700 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 CAPN2P17655 700 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 CDK8P49336 464 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 GNAQP50148 359 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 IRX5P78411 483 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 MRPS25P82663 173 aaKnown RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TUBB2AQ13885 445 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 ZSCAN26Q16670 478 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 SPTY2D1Q68D10 685 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 DYMQ7RTS9 669 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TXLNBQ8N3L3 684 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 GLIS3Q8NEA6 775 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TBCKQ8TEA7 893 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 GJA10Q969M2 543 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 DHTKD1Q96HY7 919 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 UIMC1Q96RL1 719 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 EYA3Q99504 573 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 NUDT12Q9BQG2 462 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TUBB2BQ9BVA1 445 aa8.38□□□□□ -1.07
LIMA1-213ENST00000552720 NOC4LQ9BVI4 516 aaKnown RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 RTFDC1Q9BY42 306 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-213ENST00000552720 TAF1LQ8IZX4 1826 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 CNTNAP4Q9C0A0 1308 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 POTEMA6NI47 508 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 USP17L5A8MUK1 530 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 CAPN15O75808 1086 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 PRPHP41219 470 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 BTDP43251 543 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 USP14P54578 494 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 RAD51AP2Q09MP3 1159 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 NONOQ15233 471 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 TSR1Q2NL82 804 aaKnown RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC155Q8N6L0 562 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 RIN2Q8WYP3 895 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 ARHGEF1Q92888 912 aaKnown RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 CEP95Q96GE4 821 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 DRC1Q96MC2 740 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 LRWD1Q9UFC0 647 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 MYMKA6NI61 221 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 SLC37A4O43826 429 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 EDIL3O43854 480 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 RPS6KA4O75676 772 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 TDP2O95551 362 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 EIF6P56537 245 aaKnown RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 C2orf54Q08AI8 447 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 GPS2Q13227 327 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 GRB10Q13322 594 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 PAPD7Q5XG87 772 aaKnown RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 FOXR1Q6PIV2 292 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 NEK8Q86SG6 692 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 WDR66Q8TBY9 1149 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 EXOC4Q96A65 974 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 COA7Q96BR5 231 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 MLXIPQ9HAP2 919 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 FAM207AQ9NSI2 230 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-213ENST00000552720 BLOC1S4Q9NUP1 217 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 LCMT1Q9UIC8 334 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 CAPN6Q9Y6Q1 641 aa8.37□□□□□ -1.07
LIMA1-213ENST00000552720 MYH4Q9Y623 1939 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 LAD1O00515 517 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 BAG3O95817 575 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 IDEP14735 1019 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 TNNT3P45378 269 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 ZBED6P86452 979 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 LRRC41Q15345 812 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 EZH2Q15910 746 aaKnown RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 WDR93Q6P2C0 686 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 TMED8Q6PL24 325 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 BARGINQ6ZT62 677 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 KRT25Q7Z3Z0 450 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 KCNK18Q7Z418 384 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 AMOTL1Q8IY63 956 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms