RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ID4P47928 161 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 SEPHS1P49903 392 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 PPP2R5AQ15172 486 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 SKOR2Q2VWA4 1001 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-210ENST00000552045 OGFOD3Q6PK18 319 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 CLEC10AQ8IUN9 316 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 CCDC103Q8IW40 242 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 GATA6Q92908 595 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 TCTN2Q96GX1 697 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 SLC12A9Q9BXP2 914 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 TRIM8Q9BZR9 551 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 CCDC8Q9H0W5 538 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-210ENST00000552045 APOBEC2Q9Y235 224 aaKnown RBP8.3□□□□□ -1.08
LIMA1-210ENST00000552045 DHX15O43143 795 aaKnown RBP8.29□□□□□ -1.08
LIMA1-210ENST00000552045 F2P00734 622 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 PLS3P13797 630 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 VAV1P15498 845 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 KCNMA1Q12791 1236 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 SART3Q15020 963 aaKnown RBP8.29□□□□□ -1.08
LIMA1-210ENST00000552045 RCSD1Q6JBY9 416 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 LBX2Q6XYB7 198 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 TXNRD3Q86VQ6 643 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 ZC3H7AQ8IWR0 971 aaKnown RBP8.29□□□□□ -1.08
LIMA1-210ENST00000552045 MFSD4AQ8N468 514 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 IGSF22Q8N9C0 903 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 SMAD5Q99717 465 aaKnown RBP8.29□□□□□ -1.08
LIMA1-210ENST00000552045 FAM83CQ9BQN1 747 aa8.29□□□□□ -1.08
LIMA1-210ENST00000552045 SHTN1A0MZ66 631 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 ZNF891A8MT65 544 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-210ENST00000552045 PRC1O43663 620 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 MSCO60682 206 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 PYGMP11217 842 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 RAB27AP51159 221 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 KCNAB2Q13303 367 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 EEF1DP3Q658K8 133 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 KSR1Q8IVT5 923 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 WDR75Q8IWA0 830 aaKnown RBP8.28□□□□□ -1.08
LIMA1-210ENST00000552045 NXPE1Q8N323 547 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 CNTD1Q8N815 330 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 COG1Q8WTW3 980 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 DIO2Q92813 273 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 RELTQ969Z4 430 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 TBC1D32Q96NH3 1257 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 DUSP15Q9H1R2 295 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-210ENST00000552045 CRTAC1Q9NQ79 661 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 CLEC1BQ9P126 229 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 TRHDEQ9UKU6 1024 aa8.28□□□□□ -1.08
LIMA1-210ENST00000552045 M0R2C6 588 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 CKMP06732 381 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 LCP1P13796 627 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 ADMP35318 185 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 DSG1Q02413 1049 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 PAK1Q13153 545 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 LRRC41Q15345 812 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 IQCEQ6IPM2 695 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 ZAR1Q86SH2 424 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 CCDC146Q8IYE0 955 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 SMC1BQ8NDV3 1235 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 PCDH19Q8TAB3 1148 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 ALG1Q9BT22 464 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 COQ6Q9Y2Z9 468 aa8.27□□□□□ -1.09
LIMA1-210ENST00000552045 GNAT3A8MTJ3 354 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 TRAF5O00463 557 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 AKAP10O43572 662 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 ZNF205O95201 554 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 SCGB1D2O95969 90 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 SRGAP2CP0DJJ0 459 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 ADCYAP1R1P41586 468 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 GSK3AP49840 483 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 IL2P60568 153 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 CYP27C1Q4G0S4 372 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 SYDE2Q5VT97 1194 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 YIPF4Q9BSR8 244 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 CELF4Q9BZC1 486 aaKnown RBP8.26□□□□□ -1.09
LIMA1-210ENST00000552045 TRIT1Q9H3H1 467 aaKnown RBP8.26□□□□□ -1.09
LIMA1-210ENST00000552045 GPATCH2Q9NW75 528 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 ZIM2Q9NZV7 527 aa8.26□□□□□ -1.09
LIMA1-210ENST00000552045 FAM155AB1AL88 458 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-210ENST00000552045 GABRDO14764 452 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 GAS7O60861 476 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 FKBP9O95302 570 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 GSTM1P09488 218 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 TMEM177Q53S58 311 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 RTP2Q5QGT7 225 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 FKBP9P1Q75LS8 142 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 TSPYL5Q86VY4 417 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-210ENST00000552045 USHBP1Q8N6Y0 703 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 LINC00116Q8NCU8 138 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 RCBTB1Q8NDN9 531 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 CHMP4CQ96CF2 233 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 DCAF5Q96JK2 942 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 MMP19Q99542 508 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 CABP5Q9NP86 173 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 B4GALT6Q9UBX8 382 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 ZKSCAN5Q9Y2L8 839 aa8.25□□□□□ -1.09
LIMA1-210ENST00000552045 E2F8A0AVK6 867 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 WDR64B1ANS9 1081 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 KIF3BO15066 747 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 SYPP08247 313 aa8.24□□□□□ -1.09
LIMA1-210ENST00000552045 PAMP19021 973 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms