RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ERVH48-1M5A8F1 160 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PPIP5K2O43314 1243 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 CUTAO60888 179 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PRDM1O75626 825 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 WDHD1O75717 1129 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 CYP2D6P10635 497 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 SCG2P13521 617 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 KRT2P35908 639 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PLCD1P51178 756 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 ORC2Q13416 577 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 SUZ12Q15022 739 aaKnown RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 GRIK5Q16478 980 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PFKFB3Q16875 520 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 APOBEC3HQ6NTF7 200 aaKnown RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 GAS2L3Q86XJ1 694 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 DIS3L2Q8IYB7 885 aaKnown RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 CERS5Q8N5B7 392 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 AGBL3Q8NEM8 1001 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PGBD1Q96JS3 809 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PPP1R9BQ96SB3 815 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 MYL10Q9BUA6 226 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PHF20Q9BVI0 1012 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 SPZ1Q9BXG8 430 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 MTFR1LQ9H019 292 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 OSBPL5Q9H0X9 879 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 IL17RBQ9NRM6 502 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 USP40Q9NVE5 1235 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 DACT1Q9NYF0 836 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 PI4KBQ9UBF8 816 aa7.1□□□□□ -1.27
SYNE1-239ENST00000545694 HOOK1Q9UJC3 728 aaKnown RBP7.1□□□□□ -1.27
SYNE1-239ENST00000545694 ATRNL1Q5VV63 1379 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 PALM3A6NDB9 673 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-239ENST00000545694 LILRA1O75019 489 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 TTLL1O95922 423 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 PARP1P09874 1014 aaKnown RBP7.09□□□□□ -1.27
SYNE1-239ENST00000545694 RXRAP19793 462 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 GUCY1B3Q02153 619 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 PKN1Q16512 942 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 NBPF20Q3BBV1 942 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 ASPRV1Q53RT3 343 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 FAM47AQ5JRC9 791 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 KANK3Q6NY19 840 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 CDC42EP5Q6NZY7 148 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 FAM173BQ6P4H8 233 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 SASS6Q6UVJ0 657 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 METTL16Q86W50 562 aaKnown RBP7.09□□□□□ -1.27
SYNE1-239ENST00000545694 CCAR1Q8IX12 1150 aaKnown RBP7.09□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC144CPQ8IYA2 1237 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 OGFOD1Q8N543 542 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 KDF1Q8NAX2 398 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-239ENST00000545694 MTMR14Q8NCE2 650 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 DAGLBQ8NCG7 672 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 ENGASEQ8NFI3 743 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 FAM200AQ8TCP9 573 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 FERMT2Q96AC1 680 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 CHAMP1Q96JM3 812 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 TMEM47Q9BQJ4 181 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 FUCA2Q9BTY2 467 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 GLT8D2Q9H1C3 349 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 MTMR4Q9NYA4 1195 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 TMOD2Q9NZR1 351 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 PIM2Q9P1W9 311 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 PCDHA7Q9UN72 937 aa7.09□□□□□ -1.27
SYNE1-239ENST00000545694 ARFGEF1Q9Y6D6 1849 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 LTBP3Q9NS15 1303 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 IGKV6D-41A0A0C4DH26 115 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 LOC100996750A0A140TA64 210 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 ESYT2A0FGR8 921 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 TRIM75PA6NK02 468 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 KIF28PB7ZC32 967 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 LAD1O00515 517 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 ADH1AP07327 375 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 VIL1P09327 827 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 SNHG28P0DPA3 235 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 LIG1P18858 919 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 GNA11P29992 359 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 CHRNA5P30532 468 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 PTGIRP43119 386 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 TRAF1Q13077 416 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 SNW1Q13573 536 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 PTPAQ15257 358 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 ZRSR1Q15695 479 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 GPATCH4Q5T3I0 446 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 RAB11FIP4Q86YS3 637 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 STK11IPQ8N1F8 1099 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 SRBD1Q8N5C6 995 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 FSIP1Q8NA03 581 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 MKL1Q969V6 931 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 TRIM44Q96DX7 344 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 DYNLL2Q96FJ2 89 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 PDLIM2Q96JY6 352 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 TRIM34Q9BYJ4 488 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 KRTAP4-6Q9BYQ5 205 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 NAT10Q9H0A0 1025 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 DBNDD1Q9H9R9 158 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 ANO10Q9NW15 660 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 FAM13BQ9NYF5 915 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 USP25Q9UHP3 1055 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 SAP30BPQ9UHR5 308 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 MAD2L2Q9UI95 211 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms