RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	NCOA5	Q9HCD5	579 aa	Known RBP	5.7	□□□□□ -1.5
SNHG1-222	ENST00000545308	YBX2	Q9Y2T7	364 aa	Known RBP	5.7	□□□□□ -1.5
SNHG1-222	ENST00000545308	MRPS23	Q9Y3D9	190 aa	Known RBP	5.7	□□□□□ -1.5
SNHG1-222	ENST00000545308	CCDC163	A0A0D9SF12	145 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	MYOCOS	A0A1B0GUC4	107 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	TBX1	O43435	398 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	KCNQ2	O43526	872 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	LRRN2	O75325	713 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	SEMA7A	O75326	666 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	CLEC3A	O75596	197 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	RAPGEF3	O95398	923 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	PARN	O95453	639 aa	Known RBP	5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	MYCLP1	P12525	358 aa	Predicted RBP	5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	GRIA2	P42262	883 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	CTSW	P56202	376 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	PPP2R2A	P63151	447 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	SNX17	Q15036	470 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	DCAF15	Q66K64	600 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	HEATR6	Q6AI08	1181 aa	Known RBP	5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZNF605	Q86T29	641 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	SPPL2C	Q8IUH8	684 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	SYTL4	Q96C24	671 aa	Predicted RBP	5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	KRTAP4-5	Q9BYR2	181 aa		5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZNF552	Q9H707	407 aa	Predicted RBP	5.69	□□□□□ -1.5
SNHG1-222	ENST00000545308	TRBV23-1	A0A0A0MS06	115 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	TRAV20	A0A0B4J274	112 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	AGRP	O00253	132 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	PLD2	O14939	933 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	PDGFRB	P09619	1106 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	HOXA5	P20719	270 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	STAT3	P40763	770 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	BUD31	P41223	144 aa	Predicted RBP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	CDKN1C	P49918	316 aa	Predicted RBP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	EVA1C	P58658	441 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	CHRNE	Q04844	493 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZNF227	Q86WZ6	799 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	PRPF38A	Q8NAV1	312 aa	Known RBP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	SMARCC1	Q92922	1105 aa	Predicted RBP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	VWCE	Q96DN2	955 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	C20orf173	Q96LM9	149 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	CDC6	Q99741	560 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	AARSD1	Q9BTE6	412 aa	Known RBP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	EBF1	Q9UH73	591 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZNF451	Q9Y4E5	1061 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	ADAMTS20	P59510	1910 aa		5.68	□□□□□ -1.5
SNHG1-222	ENST00000545308	TEX51	A0A1B0GUA7	166 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	SHOX	O15266	292 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	NAT2	P11245	290 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	SDS	P20132	328 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	TEK	Q02763	1124 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	DUSP4	Q13115	394 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	FNDC3B	Q53EP0	1204 aa	Known RBP	5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	NBPF12	Q5TAG4	269 aa	Predicted RBP	5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	TMEM132E	Q6IEE7	984 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	SCUBE1	Q8IWY4	988 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	CCDC144CP	Q8IYA2	1237 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	ANKS4B	Q8N8V4	417 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	OSBP2	Q969R2	916 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	PPP1R14A	Q96A00	147 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	SHISA4	Q96DD7	197 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	MRGPRX3	Q96LB0	322 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	KREMEN1	Q96MU8	473 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	IER2	Q9BTL4	223 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	ASPN	Q9BXN1	380 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	KRTAP9-3	Q9BYQ3	159 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	TYW1	Q9NV66	732 aa	Known RBP	5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	LRP2BP	Q9P2M1	347 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	ATP8A1	Q9Y2Q0	1164 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZNF281	Q9Y2X9	895 aa		5.67	□□□□□ -1.5
SNHG1-222	ENST00000545308	SHISA3	A0PJX4	238 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	GSG1L2	A8MUP6	293 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PRODH	O43272	600 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PSPN	O60542	156 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PDE8A	O60658	829 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	FGFR1	P11362	822 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PABPC1	P11940	636 aa	Known RBP	5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	CD247	P20963	164 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	CNGA1	P29973	690 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PDE6B	P35913	854 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	ANKRD39	Q53RE8	183 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	NOL8	Q76FK4	1167 aa	Known RBP	5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	RNF180	Q86T96	592 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	UBR7	Q8N806	425 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	CHAC2	Q8WUX2	184 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	LINC01599	Q8WXQ3	324 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	CAAP1	Q9H8G2	361 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	GCM1	Q9NP62	436 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	PARD6A	Q9NPB6	346 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	GPR160	Q9UJ42	338 aa		5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	G3BP2	Q9UN86	482 aa	Known RBP	5.66	□□□□□ -1.5
SNHG1-222	ENST00000545308	ZCCHC6	Q5VYS8	1495 aa	Known RBP	5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	FAM83G	A6ND36	823 aa		5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	C6orf222	P0C671	652 aa	Predicted RBP	5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	AUH	Q13825	339 aa	Known RBP	5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	ADAT2	Q7Z6V5	191 aa	Known RBP	5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	DDX42	Q86XP3	938 aa	Known RBP eCLIP	5.65	□□□□□ -1.5	7e-6	■■■□□ 16.5
SNHG1-222	ENST00000545308	C7orf61	Q8IZ16	206 aa		5.65	□□□□□ -1.5
SNHG1-222	ENST00000545308	BVES	Q8NE79	360 aa		5.65	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms