RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 LRWD1Q9UFC0 647 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 A0A1W2PQC6 194 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 G3V3G9 751 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 CCNE1P24864 410 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 PDE6BP35913 854 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 NFIAQ12857 509 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 GRB10Q13322 594 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 DCAF8Q5TAQ9 597 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 P2RX5Q93086 422 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 GTPBP4Q9BZE4 634 aaKnown RBP20.2■□□□□ 0.82
VIM-209ENST00000544301 MPHOSPH10O00566 681 aaKnown RBP20.19■□□□□ 0.82
VIM-209ENST00000544301 CSGALNACT2Q8N6G5 542 aa20.19■□□□□ 0.82
VIM-209ENST00000544301 ACRBPQ8NEB7 543 aa20.19■□□□□ 0.82
VIM-209ENST00000544301 AKT1S1Q96B36 256 aa20.19■□□□□ 0.82
VIM-209ENST00000544301 GREB1LQ9C091 1923 aaPredicted RBP20.18■□□□□ 0.82
VIM-209ENST00000544301 BICDL2A1A5D9 508 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 FCER1AP12319 257 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 TMEM266Q2M3C6 531 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 GPATCH4Q5T3I0 446 aaKnown RBP20.18■□□□□ 0.82
VIM-209ENST00000544301 ANKRD40Q6AI12 368 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 MASTLQ96GX5 879 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 PNMA5Q96PV4 448 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 BLOC1S4Q9NUP1 217 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 ZNF446Q9NWS9 450 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 COL11A2P13942 1736 aaPredicted RBP20.18■□□□□ 0.82
VIM-209ENST00000544301 TTC26A0AVF1 554 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 KIF5CO60282 957 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 SLURP2P0DP57 97 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 SLC16A2P36021 539 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 PPP1R2P41236 205 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 CRKP46108 304 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 TNNI2P48788 182 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 CLK2P49760 499 aaKnown RBP20.18■□□□□ 0.82
VIM-209ENST00000544301 ATP2B2Q01814 1243 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 PPP2R3AQ06190 1150 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 UBE2SQ16763 222 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 COBLL1Q53SF7 1204 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 SV2BQ7L1I2 683 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 ZFPM1Q8IX07 1006 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 TMX4Q9H1E5 349 aaPredicted RBP20.18■□□□□ 0.82
VIM-209ENST00000544301 EHD4Q9H223 541 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 STK17AQ9UEE5 414 aa20.18■□□□□ 0.82
VIM-209ENST00000544301 PES1O00541 588 aaKnown RBP20.17■□□□□ 0.82
VIM-209ENST00000544301 PDIA5Q14554 519 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 CCDC96Q2M329 555 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 CNNM4Q6P4Q7 775 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 TUBGCP2Q9BSJ2 902 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 KCNQ5Q9NR82 932 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 USP17L10C9JJH3 530 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 MMP10P09238 476 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 DNM2P50570 870 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 PPP4R3AQ6IN85 833 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 KCTD1Q719H9 257 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 KIAA0895Q8NCT3 520 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 MTMR8Q96EF0 704 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 ZDHHC15Q96MV8 337 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 PRDM10Q9NQV6 1147 aa20.17■□□□□ 0.82
VIM-209ENST00000544301 MYMKA6NI61 221 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 B4DLN1 442 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 ZBTB5O15062 677 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 CLCN6P51797 869 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 MCM6Q14566 821 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 OR8K1Q8NGG5 319 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 CUL5Q93034 780 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 HPS3Q969F9 1004 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 CCDC17Q96LX7 622 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 CHP1Q99653 195 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 RAB34Q9BZG1 259 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 DNAJC18Q9H819 358 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 DBNDD1Q9H9R9 158 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 FAM53CQ9NYF3 392 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 CAPN11Q9UMQ6 739 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 MYH4Q9Y623 1939 aa20.16■□□□□ 0.82
VIM-209ENST00000544301 POTEMA6NI47 508 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 ZNF569Q5MCW4 686 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 PODNQ7Z5L7 613 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 CDK5RAP3Q96JB5 506 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 DNAJC7Q99615 494 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 LUC7L2Q9Y383 392 aaKnown RBP20.15■□□□□ 0.82
VIM-209ENST00000544301 MRPL12P52815 198 aaKnown RBP20.15■□□□□ 0.82
VIM-209ENST00000544301 FAM114A1Q8IWE2 563 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 LARP4BQ92615 738 aaKnown RBP20.15■□□□□ 0.82
VIM-209ENST00000544301 EEF2KMTQ96G04 330 aa20.15■□□□□ 0.82
VIM-209ENST00000544301 CNOT6LQ96LI5 555 aaKnown RBP20.15■□□□□ 0.82
VIM-209ENST00000544301 ARHGAP25P42331 645 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 UNC13DQ70J99 1090 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 RSRC2Q7L4I2 434 aaKnown RBP20.14■□□□□ 0.81
VIM-209ENST00000544301 ZNF622Q969S3 477 aaKnown RBP eCLIP20.14■□□□□ 0.813e-17■□□□□ 9.6
VIM-209ENST00000544301 NUDT12Q9BQG2 462 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 SLF1Q9BQI6 1058 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 SEMA6BQ9H3T3 888 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 SLC39A2Q9NP94 309 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 PCDHAC2Q9Y5I4 1007 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 PVALEFA0A1B0GWK0 134 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 ABL1P00519 1130 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 CACNB3P54284 484 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 TMEM119Q4V9L6 283 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 KRT79Q5XKE5 535 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 SNX29Q8TEQ0 813 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 RAD54LQ92698 747 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms