RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TRIM47	Q96LD4	638 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	NUDT12	Q9BQG2	462 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	RIC8A	Q9NPQ8	531 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	A1CF	Q9NQ94	594 aa	Known RBP	11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	SLC5A4	Q9NY91	659 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	LOC285556	D6RIA3	1793 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	PFAS	O15067	1338 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	SPDYE3	A6NKU9	549 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	HSPA8	P11142	646 aa	Known RBP	11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	CYP2B6	P20813	491 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	LBX1	P52954	281 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	UBE2S	Q16763	222 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	JAKMIP3	Q5VZ66	844 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	MCTP1	Q6DN14	999 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	GALNT17	Q6IS24	598 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	SLC30A10	Q6XR72	485 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	ABRA	Q8N0Z2	381 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	SOCS4	Q8WXH5	440 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	ZMYND12	Q9H0C1	365 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	MAP3K20	Q9NYL2	800 aa	Known RBP	11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	CYP39A1	Q9NYL5	469 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	BIN2	Q9UBW5	565 aa	Predicted RBP	11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	PCDHA4	Q9UN74	947 aa		11.65	□□□□□ -0.54
CPSF7-221	ENST00000543545	ESYT2	A0FGR8	921 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	VPS37C	A5D8V6	355 aa	Predicted RBP	11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	OPLAH	O14841	1288 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	CTGF	P29279	349 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	KRT2	P35908	639 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	RGS2	P41220	211 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	CNTN2	Q02246	1040 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	MAP2K5	Q13163	448 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	GRB14	Q14449	540 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	MORN1	Q5T089	497 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	BLID	Q8IZY5	108 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	FAM177A1	Q8N128	213 aa	Predicted RBP	11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	REXO1	Q8N1G1	1221 aa	Known RBP	11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	SAMD3	Q8N6K7	520 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	FBXO18	Q8NFZ0	1043 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	PURB	Q96QR8	312 aa	Known RBP	11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	PHF20	Q9BVI0	1012 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	MAF1	Q9H063	256 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	TRIM17	Q9Y577	477 aa		11.64	□□□□□ -0.55
CPSF7-221	ENST00000543545	PTPRF	P10586	1907 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	PIK3CD	O00329	1044 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	MEIS2	O14770	477 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	COBL	O75128	1261 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	GNRH1	P01148	92 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	MMP1	P03956	469 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	FLT3LG	P49771	235 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	HSD17B4	P51659	736 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	PRKCZ	Q05513	592 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	ARHGEF16	Q5VV41	709 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	DIS3L2	Q8IYB7	885 aa	Known RBP	11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	RAET1E	Q8TD07	263 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	RASGRP4	Q8TDF6	673 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	SHISA4	Q96DD7	197 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	TAAR1	Q96RJ0	339 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	RMDN3	Q96TC7	470 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	MPHOSPH6	Q99547	160 aa	Known RBP	11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	EHMT1	Q9H9B1	1298 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	TMEM260	Q9NX78	707 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	ADD3	Q9UEY8	706 aa	Known RBP	11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	SRRD	Q9UH36	339 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	GJD2	Q9UKL4	321 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	PCDHA6	Q9UN73	950 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	PCDHA8	Q9Y5H6	950 aa		11.63	□□□□□ -0.55
CPSF7-221	ENST00000543545	CCDC194	A0A1B0GVG4	234 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	BTBD18	B2RXH4	712 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545		B4DLN1	442 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	FOS	P01100	380 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	SYT1	P21579	422 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	ZNF792	Q3KQV3	632 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	MCTP2	Q6DN12	878 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	TEX2	Q8IWB9	1127 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	DAGLB	Q8NCG7	672 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	OXER1	Q8TDS5	423 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	NSUN6	Q8TEA1	469 aa	Known RBP	11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	PGBD1	Q96JS3	809 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	COL20A1	Q9P218	1284 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	GABRQ	Q9UN88	632 aa		11.62	□□□□□ -0.55
CPSF7-221	ENST00000543545	DNAJC25-GNG10	A0A024R161	153 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	SOWAHB	A6NEL2	793 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	ADAMTS3	O15072	1205 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	STX6	O43752	255 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	MYCL	P12524	364 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	EIF2AK2	P19525	551 aa	Known RBP	11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	PRMT2	P55345	433 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	UBXN2A	P68543	259 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	CAP1	Q01518	475 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	GHRHR	Q02643	423 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	PDE4D	Q08499	809 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	NR5A1	Q13285	461 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	AP3B2	Q13367	1082 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	OTOP1	Q7RTM1	612 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	KRT25	Q7Z3Z0	450 aa		11.61	□□□□□ -0.55
CPSF7-221	ENST00000543545	FAM133A	Q8N9E0	248 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms