RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 KCNH4Q9UQ05 1017 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 A0A1B0GVL5 298 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 SYCE3A1L190 88 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 VWA3AA6NCI4 1184 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 SPDYE16A6NNV3 312 aaPredicted RBP8.38□□□□□ -1.07
VPS53-205ENST00000541903 MEIS2O14770 477 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 OPLAHO14841 1288 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 CTAGE5O15320 804 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 NR1I2O75469 434 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 CFBP00751 764 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 HOXA13P31271 388 aaPredicted RBP8.38□□□□□ -1.07
VPS53-205ENST00000541903 TXLNAP40222 546 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 PRPHP41219 470 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 SYKP43405 635 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 NDUFA8P51970 172 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 ZNF445P59923 1031 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 PABPC4Q13310 644 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS53-205ENST00000541903 SNAPC2Q13487 334 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 TKFCQ3LXA3 575 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 TREML2Q5T2D2 321 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 DTHD1Q6ZMT9 781 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 FASTKD5Q7L8L6 764 aaKnown RBP8.38□□□□□ -1.07
VPS53-205ENST00000541903 FCHSD1Q86WN1 690 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 CLIC6Q96NY7 704 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 TEX13BQ9BXU2 312 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 CSRNP2Q9H175 543 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 TNMDQ9H2S6 317 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 DDX25Q9UHL0 483 aaKnown RBP8.38□□□□□ -1.07
VPS53-205ENST00000541903 AGTPBP1Q9UPW5 1226 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 MRVI1Q9Y6F6 885 aa8.38□□□□□ -1.07
VPS53-205ENST00000541903 FAM237AA0A1B0GTK4 181 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 MARCH6O60337 910 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 TDP2O95551 362 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 OSBPP22059 807 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 HOXA7P31268 230 aaPredicted RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 LONP1P36776 959 aaKnown RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 SREBF1P36956 1147 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 USP11P51784 963 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 ARHGAP4P98171 946 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 GRIN1Q05586 938 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 FMR1Q06787 632 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS53-205ENST00000541903 CALCRLQ16602 461 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 TMEM266Q2M3C6 531 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 SNRNP48Q6IEG0 339 aaKnown RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 PPP4R3AQ6IN85 833 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 MOXD1Q6UVY6 613 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 FMR1NBQ8N0W7 255 aaPredicted RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 SAMD3Q8N6K7 520 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 MB21D1Q8N884 522 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 REPS2Q8NFH8 660 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 ENGASEQ8NFI3 743 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 CLEC4DQ8WXI8 215 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 CCDC34Q96HJ3 373 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 WNK4Q96J92 1243 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 TRERF1Q96PN7 1200 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 PYM1Q9BRP8 204 aaKnown RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 TMEM60Q9H2L4 133 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 HOMER2Q9NSB8 354 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 RNF146Q9NTX7 359 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 MAP3K20Q9NYL2 800 aaKnown RBP8.37□□□□□ -1.07
VPS53-205ENST00000541903 KCNH3Q9ULD8 1083 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 ADAMTS5Q9UNA0 930 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 HPSEQ9Y251 543 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 RABGAP1Q9Y3P9 1069 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 TCHHQ07283 1943 aa8.37□□□□□ -1.07
VPS53-205ENST00000541903 PHIPQ8WWQ0 1821 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 LOC285556D6RIA3 1793 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 POLR2AP24928 1970 aaKnown RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 NFIBO00712 420 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 ATP2A1O14983 1001 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 SLC37A4O43826 429 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 ZNF202O95125 648 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 CETPP11597 493 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 ZNF76P36508 570 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 STAT3P40763 770 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 HSD17B4P51659 736 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 GTF2A2P52657 109 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 GHRHRQ02643 423 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 SNW1Q13573 536 aaKnown RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 PLS1Q14651 629 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 CAMK4Q16566 473 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 SPECC1Q5M775 1068 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 RNF207Q6ZRF8 634 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 POTEDQ86YR6 584 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 C4orf32Q8N8J7 132 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 RASSF8Q8NHQ8 419 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 SYMPKQ92797 1274 aaKnown RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 TIGD1Q96MW7 591 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 SDF4Q9BRK5 362 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 RAB34Q9BZG1 259 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 GPBP1L1Q9HC44 474 aaPredicted RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 HOOK1Q9UJC3 728 aaKnown RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 PNMA3Q9UL41 463 aa8.36□□□□□ -1.07
VPS53-205ENST00000541903 ZNF214Q9UL59 606 aaPredicted RBP8.36□□□□□ -1.07
VPS53-205ENST00000541903 GOLGB1Q14789 3259 aaKnown RBP8.35□□□□□ -1.07
VPS53-205ENST00000541903 CYP3A7-CYP3A51PA0A087WV96 503 aa8.35□□□□□ -1.07
VPS53-205ENST00000541903 GOLGA6L3A6NEY3 463 aa8.35□□□□□ -1.07
VPS53-205ENST00000541903 CYP3A4P08684 503 aa8.35□□□□□ -1.07
VPS53-205ENST00000541903 CYP3A7P24462 503 aa8.35□□□□□ -1.07
VPS53-205ENST00000541903 CIITAP33076 1130 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms